 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC9238_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
ERF |
| Protein Properties |
Length: 205aa MW: 22695.3 Da PI: 4.0619 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC9238_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 25.4 | 3.5e-08 | 16 | 43 | 28 | 55 |
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
r r++lg+f tae+Aa+a +aa +l+g
RrC9238_p1 16 RERIWLGSFETAEKAARAFDAALYCLRG 43
59************************99 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 205 aa
Download sequence Send
to blast |
MDASPKYTDS SPTNSRERIW LGSFETAEKA ARAFDAALYC LRGPGARFNF PDNPPEIPGG 60
RSLTPQQIQV VASRFACEEV LPPQQQQQQE APSSPRGDKT EDGGGISARG DISGGSGGPT 120
SGQVGEDNNN HEDNSNDTTT YWPFLWEENH VVPTTSEEFG TFFMDDDSTN LYTQHQHQLS 180
SDSYYDGAYV VEDDLSHYNI NLWNF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC140977 | 2e-64 | AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence. |
| GenBank | AL589883 | 2e-64 | AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project). |
| GenBank | AY560866 | 2e-64 | AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds. |
| GenBank | BT011577 | 2e-64 | BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds. |
| GenBank | BT012243 | 2e-64 | BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds. |
| GenBank | CP002688 | 2e-64 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
