PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC931_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 293aa    MW: 31806.1 Da    PI: 6.0285
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC931_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.31e-05447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e  e+   C  ++  lC +C ++ H        H++vpl
  RrC931_p4  4 QCNVCEAAEAAVLCCADEAALCLSCDEKVHAAnklagkHQRVPL 47
               7******99*********************66899999999986 PP
2zf-B_box261.9e-085486335
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                +kC+ ++e    +fC +++ llC++C +++H 
  RrC931_p4 54 IPKCDICQEATGFFFCLQDRALLCRKCDVSIHT 86
               689******9999******************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296147IPR000315B-box-type zinc finger
CDDcd000211.33E-6347No hitNo description
SMARTSM003364.0E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8455299IPR000315B-box-type zinc finger
SMARTSM003364.2E-145299IPR000315B-box-type zinc finger
PfamPF006432.1E-65594IPR000315B-box-type zinc finger
CDDcd000216.00E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKIQCNVCEA AEAAVLCCAD EAALCLSCDE KVHAANKLAG KHQRVPLSVS SSSIPKCDIC  60
QEATGFFFCL QDRALLCRKC DVSIHTVNPY VSAHQRFLLT GIRVGLESAT DTGPSTPSND  120
DKTNETKPCT LPTSEPQKMD VDHHNHQVGL PETKVSDHIS TKLPIASSGS ATGSIPQWQI  180
DEIFGLTDFD QSYDYMENHG SSKGDTSRRG DSDSSSMMRS GDEDGEDNNN NNNCLGGGET  240
SWAVPQIHSP PTASGLNWPR HFNHHSVFVP DISSSTPYTG SSPNQRVGKR QRR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526340.0AK352634.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589962.10.0PREDICTED: B-box zinc finger protein 22-like
RefseqXP_013676324.10.0B-box zinc finger protein 22
SwissprotQ9SYM21e-161BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0D3CVZ00.0A0A0D3CVZ0_BRAOL; Uncharacterized protein
STRINGBo6g081560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-125light-regulated zinc finger protein 1