PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9340_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 377aa    MW: 43266.3 Da    PI: 10.309
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9340_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57386.14.7e-27127218498
      DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 +rl+se+Dei+lLq +id    +gk+p++d   +ye +k+s+s +++ +q+ eKi+++++K+++k+ +  +++  s s++h+qk+f+lsk iWg+
  RrC9340_p1 127 RRLFSEKDEIALLQTIIDT---KGKKPVQDKRPLYESMKGSLSNDITLRQFKEKIQNMRRKYTTKEMRGTDEQADSASNPHQQKCFQLSKAIWGT 218
                 79****************9...999*******************************************9999999******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-23127217IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTLGNGRLFH FQNLPYIRKE RVLVHRTLKL SPHISMANNL KHPLEDPPSL SSSAGDFLFI  60
SSQEEDEDQH TIFSSDEGEP EDPPLRSSSE AKLPGRKLRS GGISTNASSK RAKKMNTQGE  120
KIRSDHRRLF SEKDEIALLQ TIIDTKGKKP VQDKRPLYES MKGSLSNDIT LRQFKEKIQN  180
MRRKYTTKEM RGTDEQADSA SNPHQQKCFQ LSKAIWGTEG IPLKTANGKS KESKRRRLTK  240
KRDLLVTPSK RNNPQEGSKR RDMEKSPHAE KKPDWNENSF FLGMDFLKEK WTKVQTETKK  300
KTQEKMKKLH ANELECKKYE EMLKDMKVKC EHDKVELLNE YQSSFGSSLR DLGGGFKLGG  360
KLGVYNDVFA PVVKELL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633106.11e-151PREDICTED: mediator-associated protein 1-like
TrEMBLA0A3P6CNB01e-137A0A3P6CNB0_BRACM; Uncharacterized protein
TrEMBLM4EH401e-138M4EH40_BRARP; Uncharacterized protein
STRINGBra028105.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-29DNA-binding storekeeper protein-related transcriptional regulator