PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC935_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 338aa    MW: 39256 Da    PI: 4.873
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC935_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.92.6e-121742762114
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                p G++F+Pt  e+   +Lk+k+ g+++++  v +e  di+++ P+dLp   + ee++wy+++ + k +    +      ++ W    +d++v++ +++ v
  RrC935_p1 174 PEGIHFRPTSLEMS-IFLKQKALGQPVTACIVPEERhDIFSIPPRDLPG--YPEERHWYYYCMKPKGQ----QD----PQSLWTRFREDTAVFDLEENCV 262
                89**********97.9**********99977755556***********4..35789*******97754....33....3568************9***** PP

        NAM 101 glkktLvfykgrap 114
                g+k+ +++ + +++
  RrC935_p1 263 GIKRRFTLTEREEE 276
                ******99965443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5113810.1351197IPR005491ENT domain
SMARTSM011910.00921181IPR005491ENT domain
SuperFamilySSF1586396.02E-51266IPR005491ENT domain
PfamPF037353.7E-91266IPR005491ENT domain
SMARTSM011912.5107177IPR005491ENT domain
PfamPF037351.2E-5110144IPR005491ENT domain
SuperFamilySSF1019411.96E-16172318IPR003441NAC domain
PROSITE profilePS5100517.31173318IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAERSHEPEL KKQKLEQLQR KAYHSVLLAS KSEPSGTSHN KSQIIQKLMS EWNIDQETHI  60
SVSEKIDLSA NNATWSPNSV PNPDSLAGKR VHARFPNDEE DDSPTSKKIK LHKQAYDHVL  120
HAFNAESPAL SHSRTLIMRD LLEECNKAHI KTDPPLVEAF NTPKIVEPRS RLFPEGIHFR  180
PTSLEMSIFL KQKALGQPVT ACIVPEERHD IFSIPPRDLP GYPEERHWYY YCMKPKGQQD  240
PQSLWTRFRE DTAVFDLEEN CVGIKRRFTL TEREEESDDD IFLPDEEEPP VEEWFIREIS  300
LPSSVAVTDL VLCHVVLKMR KKTQDEEYYD EEDEEEDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894564e-55AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490829.10.0PREDICTED: uncharacterized protein LOC108861462
TrEMBLA0A3P5Y5V91e-165A0A3P5Y5V9_BRACM; Uncharacterized protein
STRINGBo8g090950.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1945367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-49NAC family protein