PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9462_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 675aa MW: 73373.3 Da PI: 6.4395

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9462_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00058	539	576	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq RrC9462_p1 539 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 576 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.8E-19	77	173	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	9.24E-4	521	577	No hit	No description
PROSITE profile	PS50888	11.28	526	575	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-5	539	582	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-4	539	587	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MGKRQISQDE VGPPINPRAG LRREQAGRGV CTRVILYMKI KVLTMGDAYY DNDHGHSNSP 60 EVQGCSVIPK DMHAGAHDSL GLAVAKMAYH VYSLGEGIVG QVAVSGEHQW VFPEYNGNCH 120 SASEFHNVWE SQIYAGVKTI LVVAVGPCGV VQLGSLLKVD EDVTLVNHIR HMFLALKDPM 180 ADHAAGLMQC NMNNSLCLPK IPSEGLNVEA YPNSSGEVGK AMDVKELTQY KLRRSDSMPY 240 NTTPSCLLME KAAQVVQGSS CGSYSSVTFG FPIDLVDATR HENQVGTSIV SDAPHVGMTS 300 GCKDPNLHQH VMKNHVLNNN TSSSALATEA ERLISGQSYT CLDSSSYQNE VFQLEGKCES 360 SRRLDALISS GYPFAGSELL EALGSGFKQT SRGGHEELVK SEHASTTGPT CDMSHSQLTF 420 DPGPENLLDA VVANVCHSDG NARDDILSSR SVHSLLTSMA EPSGQKMHSV AMMKQLPLAE 480 MDTQQNPSDI CGAFSSIGFS STCPSSSSDQ FQTSLEMMPK KIKKRAKPGE SSRPRPRDRQ 540 LIQDRIKELR ELVPNGSKCS IDSLLERTIK HMLFLQNVTK HADKLSKSAS AKMQQKETGT 600 QGSSCAVEVG GHLQVCSIIV ENLNKQGMVL IEMLCEECSH FLEIANVIRS LDLIILRGVT 660 EAQGEKTWIC FVVEV

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MGKRQISQDE VGPPINPRAG LRREQAGRGV CTRVILYMKI KVLTMGDAYY DNDHGHSNSP  60
EVQGCSVIPK DMHAGAHDSL GLAVAKMAYH VYSLGEGIVG QVAVSGEHQW VFPEYNGNCH  120
SASEFHNVWE SQIYAGVKTI LVVAVGPCGV VQLGSLLKVD EDVTLVNHIR HMFLALKDPM  180
ADHAAGLMQC NMNNSLCLPK IPSEGLNVEA YPNSSGEVGK AMDVKELTQY KLRRSDSMPY  240
NTTPSCLLME KAAQVVQGSS CGSYSSVTFG FPIDLVDATR HENQVGTSIV SDAPHVGMTS  300
GCKDPNLHQH VMKNHVLNNN TSSSALATEA ERLISGQSYT CLDSSSYQNE VFQLEGKCES  360
SRRLDALISS GYPFAGSELL EALGSGFKQT SRGGHEELVK SEHASTTGPT CDMSHSQLTF  420
DPGPENLLDA VVANVCHSDG NARDDILSSR SVHSLLTSMA EPSGQKMHSV AMMKQLPLAE  480
MDTQQNPSDI CGAFSSIGFS STCPSSSSDQ FQTSLEMMPK KIKKRAKPGE SSRPRPRDRQ  540
LIQDRIKELR ELVPNGSKCS IDSLLERTIK HMLFLQNVTK HADKLSKSAS AKMQQKETGT  600
QGSSCAVEVG GHLQVCSIIV ENLNKQGMVL IEMLCEECSH FLEIANVIRS LDLIILRGVT  660
EAQGEKTWIC FVVEV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483903.1	0.0	PREDICTED: transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A3N6QDY8	0.0	A0A3N6QDY8_BRACR; Uncharacterized protein
STRING	Bo4g176150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.3	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]