PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9508_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 212aa    MW: 24508.1 Da    PI: 4.5028
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9508_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.82.7e-16251491128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskk 96 
                 lpp++ Fh +de+l++ +L++ ve++k ++   i+++ d+y++ P+ L  ++++ +++ w+fF +++      +r+ r +   g W  +g  k++++ +
  RrC9508_p1  25 LPPCYGFHASDEQLLQLFLRPFVERSKPRT-CPIHNItDVYSSSPEILTGTYEQgGDDTWFFFGTKRYLDV-TSRNDRvIEGGGEWVRKGAIKKLFE-N 120
                 699***********************9888.5688888**********95444426668888888777665.5788883555899************.9 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++l g k+t  fy   a+    + W m+e +l
  RrC9508_p1 121 NTLLGFKRTQDFY---AQGMDLAYWRMEELSL 149
                 99***********...44445789*9999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-2019154IPR003441NAC domain
PROSITE profilePS5100522.06325176IPR003441NAC domain
PfamPF023653.1E-926148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDQSPAPANL VDSTTSFQLH RNLNLPPCYG FHASDEQLLQ LFLRPFVERS KPRTCPIHNI  60
TDVYSSSPEI LTGTYEQGGD DTWFFFGTKR YLDVTSRNDR VIEGGGEWVR KGAIKKLFEN  120
NTLLGFKRTQ DFYAQGMDLA YWRMEELSLR VEQDHPVEDI TPPTQNDASI PGFTAQQTET  180
DQSPTADQDF IYPSEQERRE WMKETFLNPR DQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443649.11e-145PREDICTED: NAC domain-containing protein 92-like
TrEMBLA0A397YLT81e-74A0A397YLT8_BRACM; Uncharacterized protein (Fragment)
TrEMBLM4CGA42e-73M4CGA4_BRARP; Uncharacterized protein
STRINGBra003237.1-P4e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.13e-16NAC domain containing protein 64