PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC950_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 259aa    MW: 29536.5 Da    PI: 8.3565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC950_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-1118110399
                EE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   3 kvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                k l+p  + ks ++ ++p +f+++  ++    +  ++l  ++++sW++ l     +++ +++++ W eFv++n L   D++vF++++++ f   v++f+k
  RrC950_p4  18 KSLSPGQNWKSkSMRIIPEEFLRSTcESF---EHRVVLSVPWNNSWQLWL--HPDKKGlFMIKEDWDEFVDDNFLGPDDTLVFTHQNTMYF--QVRIFKK 110
                55555555555255699*****9995333...346***************..6666666*************************8877888..8998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1413112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-1514111IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-1216111IPR003340B3 DNA binding domain
PROSITE profilePS5086310.81417111IPR003340B3 DNA binding domain
PfamPF023622.3E-928110IPR003340B3 DNA binding domain
CDDcd100172.67E-1128109No hitNo description
SuperFamilySSF1019363.73E-9158243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-7159244IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.27165258IPR003340B3 DNA binding domain
PROSITE profilePS508637.26222259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSPERKMQEC LSKSSFSKSL SPGQNWKSKS MRIIPEEFLR STCESFEHRV VLSVPWNNSW  60
QLWLHPDKKG LFMIKEDWDE FVDDNFLGPD DTLVFTHQNT MYFQVRIFKK DGKEIISAPL  120
GVEPKKETTS ASTSASGRTT TRGRKSCANV QNPERYLLNP QNPYCAKTVT KSNHLLHVGT  180
PVIRQYGLEF GPRDSSMYFI LPDGNKVDGL TKYYSGSPSF LGWENVCQQY NLKTGDTVVC  240
EFELSGRVVA GVRVHFVNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489812.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D94e-99Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A398A3Q51e-173A0A398A3Q5_BRACM; Uncharacterized protein
STRINGBo3g071320.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.24e-87B3 family protein