PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC953_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 295aa    MW: 32142.5 Da    PI: 5.9471
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC953_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17216251134
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  RrC953_p1 216 CRHCGTSEnsTPMMRRGPEGPRTLCNACGLMWANKG 251
                *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.0E-1070105IPR010399Tify domain
PROSITE profilePS5132014.30170105IPR010399Tify domain
PfamPF062001.1E-1075104IPR010399Tify domain
PfamPF062036.2E-15140182IPR010402CCT domain
PROSITE profilePS5101712.431140182IPR010402CCT domain
SMARTSM004012.4E-10210263IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.895210266IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-13213275No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15215257IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440216243IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15216251IPR000679Zinc finger, GATA-type
CDDcd002021.24E-15216269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDDDGLHGNM HNGGDEHPLH VQYEHHGMMD ADHAEDDDGN GMNGGLETDI PSHLGNPSDH  60
RGEVVDRGGG ADNGDQLTLS YQGQVYVFDH VLPDKVQSVL LLLGGREVPQ TLPTSLGTPQ  120
QNNRVLGLSG TPQRLSAPQR QASLLRFREK RKGRNFGPTI RYTVRKEVAL RMQRKKGQFT  180
SAKSSIEDPS STGSDWGSGQ SWALEGCETQ KPEALCRHCG TSENSTPMMR RGPEGPRTLC  240
NACGLMWANK GALRDLSKAP PPQITRNQPA NNNDDSNLDA DQMMVVVADD ISNSN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486781.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_018486782.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL71e-153GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3N6RG160.0A0A3N6RG16_BRACR; Uncharacterized protein
TrEMBLA0A3P6ELF80.0A0A3P6ELF8_BRAOL; Uncharacterized protein
STRINGBo5g103560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-146ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]