PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9573_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 411aa    MW: 46338.9 Da    PI: 8.4212
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9573_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.7e-12271296126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF H+
  RrC9573_p2 271 YQPDICKDYKETGYCGYGDSCKFLHD 296
                 66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-9269302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009270298IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8270297IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9271296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-13271301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.6E-13330387IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139206.9E-9345387No hitNo description
SuperFamilySSF578503.79E-13345388No hitNo description
PROSITE profilePS5008910.66346384IPR001841Zinc finger, RING-type
SMARTSM001845.0E-5346383IPR001841Zinc finger, RING-type
CDDcd001623.99E-8346387No hitNo description
PROSITE patternPS005180361370IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MRRAINQSMC LQNVSDQKKC EHRRGSSSRR TSPARFRKAY MPVNGIGRGG AKFELVVCIT  60
MSDTVQEPKT SHQQQDSQPA AAVAAVTQES QSQQVCTFFK KPSKAKNIRK RPAADADEED  120
DDDSKSETSI LNKLKKVAKP DNNKLFFSSG PSKISATTAP PEKAVVFHYD SSKEIQVQND  180
SRATATLETE TDFNQDARAI RERVLKRADE ALKGNKKNKA SDEKLYTGIH GYTDHKAGFR  240
REQTISSEKA GGSHGPLRAS AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFLHDRGDY  300
KPGWQIEKEW EEAEKVRKRN KAMGVEDEDD DEADSEEDED ALPFACFICR ESFVDPVVTK  360
CKHYFCEHCA LKHHTKNKKC FVCNQPTMGI FNAAHEIKKR MAEERSKAQG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M7e-699441013326RING finger protein 113A
5z58_M7e-699441013326RING finger protein 113A
6ff4_t7e-699441013326RING finger protein 113A
6ff7_t7e-699441013326RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440868.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A397XHL20.0A0A397XHL2_BRACM; Uncharacterized protein
STRINGXP_010474729.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein