PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9596_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 290aa    MW: 32739.4 Da    PI: 7.0991
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9596_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.51.1e-3221123199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kv tpsdv+k++rlv+pk++ae++    +++++++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d  ++ +l++ 
  RrC9596_p1  21 FDKVVTPSDVGKLNRLVIPKQHAERFfpldNSDNNKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDPGNKDKLFID 119
                 89****************************66677889*************************************************996677789*** PP

                 EE-S CS
          B3  96 vfrk 99 
                 ++r+
  RrC9596_p1 120 WRRR 123
                 *998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-4311126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-3118125IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-2619112No hitNo description
PROSITE profilePS5086314.69221124IPR003340B3 DNA binding domain
PfamPF023628.7E-3021123IPR003340B3 DNA binding domain
SMARTSM010191.1E-2321124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNQEEEKPVE KASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERFFPLD NSDNNKGLLL  60
NFEDRTGNSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFQRDP GNKDKLFIDW  120
RRRPKILDHH HQTAYQFSGA AFPRFYSFSN PLNLYHRYQR DLGIGYYVRS MERNDPTAVI  180
ESVPVILQSR AAHVDAIASS SGEKRLRLFG VDMEWGGGGG GSVNSTEEES SSSGGSMSRG  240
GVPMAGVGSH LQLRLVSSDD ESLVAMEAAS VDEDHHLFTK KGKSSLSFDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66161263116B3 domain-containing transcription factor NGA1
5os9_B2e-66161263116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728771e-149AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662332.11e-175B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2681e-154NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLM4CGZ91e-171M4CGZ9_BRARP; Uncharacterized protein
STRINGBra003482.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-144B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]