PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9613_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 435aa    MW: 49827.4 Da    PI: 6.2624
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9613_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.97e-21185237155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k r++W ++L ++F++ave L G+e A+Pk+ile m+v gLt+e+v+SHLQk+R+
  RrC9613_p1 185 KRRVVWDKDLKKKFLDAVEYL-GPE-AVPKKILERMNVVGLTRENVASHLQKHRM 237
                 689******************.887.****************************7 PP
2Response_reg48.74.2e-17121191108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++  +++ l++ l++ +y ev+++ +g ea++ll ++   +D+ ++  + +  d ++l++ei++e  ++pii+++  ++ + +++ +k G+ 
    RrC9613_p1  12 VLVFDEDLQNLHSLEKHLQDFRY-EVTTCHEGAEAMRLLGNHLnkFDIAIVEAQNSAADIFRLISEIASEI-DVPIIIISKDDSVQSVINWIKIGVC 106
                   7999*******************.***************776557**********************9988.9************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                   d+l Kp+ pe+l+
    RrC9613_p1 107 DYLIKPIRPEDLR 119
                   ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.42E-228130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.5E-239156No hitNo description
SMARTSM004481.2E-810122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.39311126IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-1112120IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.33E-1213125No hitNo description
PROSITE profilePS512949.602182243IPR017930Myb domain
SuperFamilySSF466892.15E-13182241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-20183241IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-20185237IPR006447Myb domain, plants
PfamPF002491.9E-6187236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MLTGMFPEGL RVLVFDEDLQ NLHSLEKHLQ DFRYEVTTCH EGAEAMRLLG NHLNKFDIAI  60
VEAQNSAADI FRLISEIASE IDVPIIIISK DDSVQSVINW IKIGVCDYLI KPIRPEDLRL  120
IFKHVVKKMR VGRMVESEDK AAPEKSSSVG DSTIRNPNKR TRSMFIDGQV DEKDQDHVRD  180
STTKKRRVVW DKDLKKKFLD AVEYLGPEAV PKKILERMNV VGLTRENVAS HLQKHRMLLN  240
KQKNQNEKDE NRCLLSQQGG MYSGEGSSKF YRGSNIQFST QHISNIPQPF IHHHDGVSVA  300
VSTRNLHHHQ TSDFTCIKNV EESLIYNEED AEVSNLASFF TQNEGMSLSH LHEPVMATTM  360
LSNGNQLFPN QQPMMSFHEP SILHTHSFPS SLTPTSFLDQ KETSMMTNES EGLQQWLLIE  420
QEQPNLTDEN RFFEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-14181241162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129772.10.0PREDICTED: putative two-component response regulator-like APRR4
SwissprotQ9FJ162e-89APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A3P6D6I50.0A0A3P6D6I5_BRAOL; Uncharacterized protein
STRINGBra020652.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-91pseudo-response regulator 4