PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9678_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 230aa MW: 26333.8 Da PI: 8.2076

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9678_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.4	7.6e-42	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + GfrF Pt++el+ +yL++++eg++ ++++vi+ +d+++veP++Lp+ ++ ++ ++w+fF++r++++a+g r++r++ sgyWkatg+ +v+sk RrC9678_p2 6 TIGFRFYPTEDELIAFYLRNQLEGRSgDTMHRVIPVLDVFEVEPSHLPNmageRCLGDAEQWFFFVPRQEREARGGRPSRTIGSGYWKATGSPGPVFSK 104 68*********************96556678***********534553344778*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kkt+vfy+grap+g+kt+W m+ey++ RrC9678_p2 105 DNRMIGVKKTMVFYTGRAPTGRKTKWKMNEYKA 137 *****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-46	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	46.297	5	162	IPR003441	NAC domain
Pfam	PF02365	5.4E-22	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTEELTIGFR FYPTEDELIA FYLRNQLEGR SGDTMHRVIP VLDVFEVEPS HLPNMAGERC 60 LGDAEQWFFF VPRQEREARG GRPSRTIGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG 120 RAPTGRKTKW KMNEYKAVDK TFNVSTIPKL RHEFSLCRVY ITSGSSRAFD RRPMGNFQAE 180 RMLTRDVAVG ETSVRVESSP EASMSGGEHG YLSMNGEIEP IWEWEQLNWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-32	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-32	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-32	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-32	5	167	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	5e-32	5	167	20	173	NAC domain-containing protein 19
3swm_B	5e-32	5	167	20	173	NAC domain-containing protein 19
3swm_C	5e-32	5	167	20	173	NAC domain-containing protein 19
3swm_D	5e-32	5	167	20	173	NAC domain-containing protein 19
3swp_A	5e-32	5	167	20	173	NAC domain-containing protein 19
3swp_B	5e-32	5	167	20	173	NAC domain-containing protein 19
3swp_C	5e-32	5	167	20	173	NAC domain-containing protein 19
3swp_D	5e-32	5	167	20	173	NAC domain-containing protein 19
4dul_A	4e-32	5	167	17	170	NAC domain-containing protein 19
4dul_B	4e-32	5	167	17	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175806	0.0	AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBank	AY086944	0.0	AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444377.1	1e-169	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-141	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M4CDX7	1e-153	M4CDX7_BRARP; Uncharacterized protein
STRING	Bra002408.1-P	1e-154	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-143	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]