PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9679_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 260aa    MW: 29582.9 Da    PI: 8.0042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9679_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08155202455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  RrC9679_p1 155 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMATMLDEIINYVQSLQ 202
                 8*************************8....366999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.67E-9149206No hitNo description
SuperFamilySSF474591.96E-16149219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-6155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-9157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MANFENLSSD FQTMAMDIYS SMTQAADLNN NSSNLQFQTF PPFSTCLDSF FLHRHQQQLL  60
AYPGKYPGSD NNLSTTSILY HPNHNNVHET KKRKDSLQTL SSSENSSVSD QLNINTTETG  120
CSRRGKRSKK QKNQEEEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDIVPG  180
CYKSMGMATM LDEIINYVQS LQNQVELLSM KLTAASSFYD FNSETDAVDS MQRARAREAV  240
EMGRQTRDGN PVLHLSTWSL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482284.10.0PREDICTED: transcription factor BEE 1
SwissprotQ8GZ131e-125BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A3P5YFI01e-160A0A3P5YFI0_BRACM; Uncharacterized protein
STRINGBo5g025360.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-109BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]