PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9741_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 135aa    MW: 15390.4 Da    PI: 9.6311
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9741_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA108.36.1e-3452108158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep++VNaKQy++Il+RRq+Rakle+++k+  ksrkpylheSRh hA+rRpRg+gGrF
  RrC9741_p1  52 EEPVFVNAKQYHGILRRRQSRAKLESQNKV-VKSRKPYLHESRHLHAIRRPRGCGGRF 108
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-3850111IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.64251111IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-2853108IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-245476IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068605676IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-2485108IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
APGHYPYPDL YYRSICAPNP QVFPQRPYET GVHAHLMGVQ QQCVPLPSDA VEEPVFVNAK  60
QYHGILRRRQ SRAKLESQNK VVKSRKPYLH ESRHLHAIRR PRGCGGRFLN AKKEEEHHED  120
SHVEEKSMAA SGGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-2251118168NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0042741e-83BT004274.1 Arabidopsis thaliana clone RAFL15-46-O22 (R50095) putative transcription factor (At1g30500) mRNA, complete cds.
GenBankBT0055611e-83BT005561.1 Arabidopsis thaliana clone U50095 putative transcription factor (At1g30500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470276.12e-91PREDICTED: nuclear transcription factor Y subunit A-7
RefseqXP_018470284.12e-91PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP11e-73NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A3P5Y2L25e-88A0A3P5Y2L2_BRACM; Uncharacterized protein
TrEMBLM4EUB35e-88M4EUB3_BRARP; Uncharacterized protein
STRINGBra032395.1-P9e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.26e-65nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]