PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9807_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 292aa    MW: 33226.5 Da    PI: 6.5063
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9807_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.82.9e-20112171359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg+ WrKYGqK++k+s++ rsYYrC+++    C ++k+ ++ +++p v  +tY g+H+++
  RrC9807_p2 112 DGFLWRKYGQKTIKKSKHQRSYYRCSYNidhACGARKHEQKIKDNPPVYRTTYFGHHTCN 171
                 9**************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.762105173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-21108171IPR003657WRKY domain
SuperFamilySSF1182901.44E-20109172IPR003657WRKY domain
SMARTSM007741.0E-29110172IPR003657WRKY domain
PfamPF031061.4E-20112170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNTSQEKAVQ AILHGHSCAK RLKLRLDHPM ANDRSVSNYD LAKSIVHCFS SAISIFSDTP  60
KSEDGLFSHL SSMDSSSSPP LPQRSHSKKR KNNDTNSSEN WSHDSPDPNY YDGFLWRKYG  120
QKTIKKSKHQ RSYYRCSYNI DHACGARKHE QKIKDNPPVY RTTYFGHHTC NINQNQDAGF  180
TTVGVGDPID NLENSRMIRF GQDLDQDTSG LSVSVKHEEG IIREETMDQY RGITGNDKDC  240
QIEIKENHQS SPSGSYTPPS SSGSEIDMFD SDLLVEDLDL WDRYDLYDFG LR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-151121701068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290QRSHSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453035.10.0PREDICTED: probable WRKY transcription factor 38 isoform X1
SwissprotQ8GWF11e-111WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A078K2680.0A0A078K268_BRANA; BnaAnng39080D protein
TrEMBLM4DUK30.0M4DUK3_BRARP; Uncharacterized protein
STRINGBra020196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-103WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]