PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9890_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 132aa    MW: 15580.5 Da    PI: 4.8822
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9890_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.51.7e-121511234128
         NAM  34 ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy..........kgrapkgekt 119
                  +e+ di++ +P+dLp   + +e++wyf++++         ++r+t++++Wk+tg++++vl+   +++lvg+k+ +++             ++  +++ 
  RrC9890_p2  15 PEEChDIFSKHPRDLPG--YPRETHWYFYCRKL--------SSRVTSHSIWKQTGEETDVLDPknNDALVGIKRPFTLLdheeesddilLSDEDGPSQH 103
                 455579**********4..34789******975........47999***************98666677*********966555544432555666799 PP

         NAM 120 dWvmheyrl 128
                 +W+m+e +l
  RrC9890_p2 104 NWFMDEISL 112
                 ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.4261129IPR003441NAC domain
SuperFamilySSF1019418.24E-1519128IPR003441NAC domain
PfamPF023652.6E-525111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEEEPMKVRN VRYVPEECHD IFSKHPRDLP GYPRETHWYF YCRKLSSRVT SHSIWKQTGE  60
ETDVLDPKNN DALVGIKRPF TLLDHEEESD DILLSDEDGP SQHNWFMDEI SLPLTVSETD  120
RILCHVFPKI KP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479679.15e-86PREDICTED: NAC domain-containing protein 5-like
TrEMBLA0A078I9631e-80A0A078I963_BRANA; BnaC04g33200D protein
TrEMBLA0A0D3C0D71e-80A0A0D3C0D7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9B51e-80A0A3P6C9B5_BRAOL; Uncharacterized protein
STRINGBo4g140840.12e-81(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-47NAC family protein