PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9906_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 165aa    MW: 19302.2 Da    PI: 4.0223
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9906_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.56.9e-12910636128
         NAM  36 ev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy..........kgrapkgektdW 121
                 e+ di++ +P+dLp   + +e++wyf++++  ++ t   +n    +++Wk+ g+++ vl+    ++lvg+k++++f             ++ ++ + +W
  RrC9906_p1   9 EChDIFSRHPRDLPG--YPRETHWYFYCRKLDSQVT---PNS---HSFWKQIGEETGVLDPknYDTLVGIKRIFTFVdheeepndilLSDEDEPPQYNW 99 
                 4569**********4..34789******99886543...444...589***********98555567**********766655554436777888**** PP

         NAM 122 vmheyrl 128
                 +m+e++l
  RrC9906_p1 100 FMDEFSL 106
                 *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.5331123IPR003441NAC domain
SuperFamilySSF1019412.62E-1711124IPR003441NAC domain
PfamPF023656.5E-618106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGSPIVPEEC HDIFSRHPRD LPGYPRETHW YFYCRKLDSQ VTPNSHSFWK QIGEETGVLD  60
PKNYDTLVGI KRIFTFVDHE EEPNDILLSD EDEPPQYNWF MDEFSLPLTI SETDWVLCHV  120
FHKNIEPESE EEEGENEEKE TVEAESLDLL IEKDENVLPP SPSPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325431e-170AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444528.11e-100PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A078FEP19e-88A0A078FEP1_BRANA; BnaC06g13440D protein
TrEMBLA0A0D3CT739e-88A0A0D3CT73_BRAOL; Uncharacterized protein
STRINGBo6g064960.12e-88(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.13e-60NAC family protein