PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9907_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 101aa MW: 11153.5 Da PI: 4.9612

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9907_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.6	2.7e-16	2	50	52	100
DUF260 52 eeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++r+da++slvyeA+a+++dPvyG+vg+i++l++qle+l+++la +++e RrC9907_p1 2 NHRSDALNSLVYEANAKVQDPVYGCVGTISSLNRQLETLQTQLAFAQAE 50 579*****************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.411	1	51	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-13	2	48	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MNHRSDALNS LVYEANAKVQ DPVYGCVGTI SSLNRQLETL QTQLAFAQAE LVHMKMLQHV 60 DTKSPPYIAS GITFPANKDF SSDVDMAFVY DNGAGESLWS R

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149087.1	1e-58	PREDICTED: LOB domain-containing protein 3
Refseq	XP_013641646.1	1e-58	LOB domain-containing protein 3
Refseq	XP_013659026.1	1e-58	LOB domain-containing protein 3
Refseq	XP_013710686.1	1e-58	LOB domain-containing protein 3-like
Swissprot	Q9SA51	5e-51	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	A0A078HS02	3e-57	A0A078HS02_BRANA; BnaC05g12610D protein
TrEMBL	A0A078JJD7	3e-57	A0A078JJD7_BRANA; BnaA06g38340D protein
TrEMBL	A0A291LQZ1	3e-57	A0A291LQZ1_BRARR; Transcription factor LBD3
TrEMBL	A0A397Z3B7	3e-57	A0A397Z3B7_BRACM; Uncharacterized protein
TrEMBL	A0A3N6QCN1	3e-57	A0A3N6QCN1_BRACR; Uncharacterized protein
TrEMBL	A0A3P6FEE1	3e-57	A0A3P6FEE1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FL12	3e-57	A0A3P6FL12_BRAOL; Uncharacterized protein
TrEMBL	M4EB83	3e-57	M4EB83_BRARP; Uncharacterized protein
STRING	Bra026042.1-P	5e-58	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	2e-53	ASYMMETRIC LEAVES 2-like 9

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]