PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9921_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 963aa    MW: 107601 Da    PI: 5.3733
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9921_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1140.16.5e-44109632118
        CG-1  32 trpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                 ++   gs++L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+++n++fqrr+yw+L+eel++iv+vhylevk
  RrC9921_p1  10 NNELGGSVFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQRRSYWMLQEELSHIVFVHYLEVK 96 
                 555679******************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143762.1841101IPR005559CG-1 DNA-binding domain
SMARTSM010762.3E-48196IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-361095IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.4E-16425507IPR014756Immunoglobulin E-set
CDDcd002044.37E-11584714No hitNo description
Gene3DG3DSA:1.25.40.203.4E-15585717IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.237588714IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-15600717IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.11655687IPR002110Ankyrin repeat
SuperFamilySSF525401.65E-8808862IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.92811833IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.029813841IPR000048IQ motif, EF-hand binding site
PfamPF006120.0038814832IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011834856IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468835859IPR000048IQ motif, EF-hand binding site
PfamPF006121.1E-4837856IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MAEARRFSPN NELGGSVFLF DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH  60
CYYAHGQDNE NFQRRSYWML QEELSHIVFV HYLEVKGSRV STSYNRMQRT EDSAPSSQET  120
GEVYTSERNG YASGSINQYD HSNHSQATDS ASVNGVHTPE LEDAESAYNQ QGSSILYSHQ  180
ALQQPPATSF DPYYQMSLTP RDSYQKDLRT IPSSTMVEKG RTINGPVLTN SIKTKKSIDS  240
QTWEEILGNC GSGGGEGLPM QPHREHEVLD QMLESYSFTM QDFASLQESM VKSQNQELNS  300
GLTSDHSMWF QGQAVDIEPN ALSNLASSEK APYLSTMKQH LLDGALGEEG LKKMDSFNRW  360
MSKELGELGD VGVTPDANES FTHSSSTAYW EEVESEDVSN VHNSRRDLDG YVMSPSLSKE  420
QLFSIIDFAP NWTYVGCEVK VLVSGKFLKT AETREWSCMF GQTEVPADII ANGILECVAP  480
MHEAGRVPFY VTCSNRLACS EVREFEYKVL ESQVFDRETD DSTACNSIES LEARFVKLLC  540
SKSDCPNTSL SGNDSDLSQV SEKISLLLFE NDDGLDQMLM NEISQENMKN NLLQEALKES  600
LHSWLLQKIA EGGKGPNVLD EGGQGILHFA AALGYNWALE PTIVAGVSVD FRDVNGWTAL  660
HWAAFFGREL IIGSLIALGA SPGTLTDPNP DFPSGSTPSD LAYANGYKGI AGYLSEYALR  720
AHVSLLSLNE KNAAVETAPS PSSSALTDSL TAVRNASQAA ARIHQVFRAQ SFQKKQMKEL  780
GDRKLGMSEE RAISMLAPKT HKQGRAHSDD SVQAAAIRIQ NKFRGYKGRK DYLITRQRII  840
KIQAHVRGYQ VRKNYRKIIW SVGILEKVIL RWRRKGAGLR GFKSDALVTK MQDGTEKEED  900
DDFFKQGRKQ TEERLEKALA RVEKALANSE EAACFDDDLI DIEALLGDDD TLMMPMPSTL  960
WNT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483642.10.0PREDICTED: calmodulin-binding transcription activator 3
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A3P6CXK70.0A0A3P6CXK7_BRACM; Uncharacterized protein
STRINGBra030248.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]