PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9933_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 192aa    MW: 21922 Da    PI: 5.189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9933_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.6e-15381201099
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +  ++++ +p +f+ + g  ++ + t+t++++ g +  +++  ++++++++l+kGW+eF++a+ ++eg f+ F ++g+s+f  +v++f+ 
  RrC9933_p1  38 TIMEKMMKIPARFV-RLG--PKLTETVTIQTPVGFKRPIRI--KRTGNKVWLEKGWSEFAEAHSINEGHFLYFCYEGNSSF--RVMIFDV 120
                 4556679*******.565..457779***************..*************************************9..9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.92E-2125121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1927121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39229121IPR003340B3 DNA binding domain
CDDcd100171.09E-1629119No hitNo description
SMARTSM010191.9E-1331121IPR003340B3 DNA binding domain
PfamPF023621.0E-1237119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNTTRRASAR ITSAASQRRQ KPEPEPAVKK FIKIILPTIM EKMMKIPARF VRLGPKLTET  60
VTIQTPVGFK RPIRIKRTGN KVWLEKGWSE FAEAHSINEG HFLYFCYEGN SSFRVMIFDV  120
SASEIDYPMD KVHVIESDDD EVMEAMDTDD EEEGFTRVDS SDNDSSDAEA IDLENLLKKM  180
PRVSVKSETI TI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449383.11e-140PREDICTED: B3 domain-containing protein At1g49475 isoform X1
SwissprotQ9XIB44e-80Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLA0A0D3DJK81e-115A0A0D3DJK8_BRAOL; Uncharacterized protein
STRINGBo8g011590.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-68B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]