PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC993_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 333aa    MW: 37999.1 Da    PI: 8.0326
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC993_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-102258339
               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39
               ++k  rr+++NReAA++sR+RKka++++Le+   +L 
  RrC993_p1 22 PDKIKRRLAQNREAAKKSRLRKKAYVQQLETSRLKLI 58
               57899*************************8655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.3E-71867No hitNo description
SMARTSM003382.0E-52083IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.6342264IPR004827Basic-leucine zipper domain
PfamPF001707.1E-82353IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-62460No hitNo description
PROSITE patternPS0003602742IPR004827Basic-leucine zipper domain
PfamPF141447.7E-29135210IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
SEDTSHGTPL VFDQETSTSR HPDKIKRRLA QNREAAKKSR LRKKAYVQQL ETSRLKLIQL  60
EQELDRARQQ GFYVGNGIDT STTTSLGFSE NMNPGVYQEQ GSILDKNQNL NVKIKTGIVA  120
FEMEYGHWIE EQNKQICELR TVLQGHVGDV ELRLLVEIAM KHYFDLFRMK SAAAKEDVFF  180
IMSGMWRTSA ERFFLWIGGF RPSDLIKVLL PHFDVMTDQQ ILDVCNLRQS CQQAEDALSQ  240
GMEKLQHTLA DCVAGGRLGE GNYAPQVNSA MERAEASVSF VNQADHLRHE TLQQMHRILT  300
TRQAARGLLA LGEYFQRLRA LSSSWATRHR EPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5320570.0FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452633.10.0PREDICTED: transcription factor TGA1-like isoform X1
RefseqXP_018452634.10.0PREDICTED: transcription factor TGA1-like isoform X1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0D3E2A60.0A0A0D3E2A6_BRAOL; Uncharacterized protein
STRINGBo9g018570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]