PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9964_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 132aa MW: 15105.3 Da PI: 4.9626

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9964_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.2	7.7e-17	58	93	8	43
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 nrqvtf+kRrng++ KA LS+LC+ vav+++s RrC9964_p1 58 NRQVTFCKRRNGLMEKARQLSILCGSSVAVLMVSRG 93 9********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00404	3.8E-8	45	65	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.0E-11	48	102	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-16	58	96	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.95E-15	58	93	No hit	No description
SuperFamily	SSF55455	3.01E-15	58	105	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.385	58	103	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-8	65	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-8	80	101	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MEEDDEFGEE ESNICFKNQE ILVANDLDLS FHWYQFRFLD VLLGFEIGSR DSLVMVFNRQ 60 VTFCKRRNGL MEKARQLSIL CGSSVAVLMV SRGYKMVVLR SDPIAPDVAS EIDSKSTPIF 120 SPISQHHRKE IG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28908	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65080.1	1e-15	MIKC_MADS family protein