PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC999_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 182aa    MW: 21110.7 Da    PI: 10.334
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC999_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.3e-1370119554
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                +r++r+ +NRe+A+rsR RKk++ieeL++ v++L   N+ L +++ +l +
  RrC999_p5  70 RRAKRMVSNRESAKRSRMRKKKQIEELQQQVEQLMIMNHNLSEKVINLLE 119
                89****************************************99877755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-1266130IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0768131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-1069123No hitNo description
SuperFamilySSF579597.5E-1170122No hitNo description
PfamPF001702.0E-1170128IPR004827Basic-leucine zipper domain
CDDcd147021.15E-1571122No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MESSSVHRSH HCFDIFQGKP PQDDHFNSTF LPNANFHVPL QSPNISTRSN NNNRVHLDPN  60
VYEGPVPDER RAKRMVSNRE SAKRSRMRKK KQIEELQQQV EQLMIMNHNL SEKVINLLES  120
NHQILRENSQ LKEKASSFQL LMAEMLIPVR NVMDGSSSIS DRNPNHHLRG ETSSRTNTFF  180
GR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287KRSRMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596090.11e-107PREDICTED: basic leucine zipper 34-like
TrEMBLA0A3N6T4V51e-107A0A3N6T4V5_BRACR; Uncharacterized protein
STRINGBo7g098020.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.16e-64basic leucine-zipper 70