PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00002.1_g00077.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 394aa MW: 41741.5 Da PI: 6.7008

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00002.1_g00077.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.1	1.1e-36	44	213	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas... 83 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s Rsa1.0_00002.1_g00077.1 44 AVTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGStls 129 689******************************************************************99977777777777444 PP TCP 84 nsssg...................................kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 + ++ ++++++ q+ + ++ +++ s+++ r+ +++e++ k+ Rsa1.0_00002.1_g00077.1 130 A---LppsksvplygalglthhhhqyeeqgggafgahlgfHHHHLQPQQQHHQQAQGETIPPHRFSSKRYRSSVDSSSKEDNEGKQ 212 0...2555566677777777777788899999999998764444444444444444445666666666666665555555554444 PP TCP 135 k 135 + Rsa1.0_00002.1_g00077.1 213 S 213 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-41	49	209	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	50	104	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MDLSDDGATA SRHLLDPSLS IVPRSEDPTT SSTAAATPTT SGGAVTKRST KDRHTKVDGR 60 GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IVAATGTGTI PANFSSLSVS 120 LRSSGSTLSA LPPSKSVPLY GALGLTHHHH QYEEQGGGAF GAHLGFHHHH LQPQQQHHQQ 180 AQGETIPPHR FSSKRYRSSV DSSSKEDNEG KQSENKSLKE SEPPAGATGA PMWAVAPTNR 240 SAGGNTFWML PVPTTAAGNQ PAAMESSSNS NSNRAHMWPF GAAGAGAGGG ATHFMAGTGF 300 SFPMDQYRGS PLQLGSFLAQ PQQQQQQPNQ SIGLSMPDSN LGVLAALNAA YSRGGNADAE 360 QVNNAVEHQE KQQQQTQQSD QDDDSRDENS NSDG

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MDLSDDGATA SRHLLDPSLS IVPRSEDPTT SSTAAATPTT SGGAVTKRST KDRHTKVDGR  60
GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IVAATGTGTI PANFSSLSVS  120
LRSSGSTLSA LPPSKSVPLY GALGLTHHHH QYEEQGGGAF GAHLGFHHHH LQPQQQHHQQ  180
AQGETIPPHR FSSKRYRSSV DSSSKEDNEG KQSENKSLKE SEPPAGATGA PMWAVAPTNR  240
SAGGNTFWML PVPTTAAGNQ PAAMESSSNS NSNRAHMWPF GAAGAGAGGG ATHFMAGTGF  300
SFPMDQYRGS PLQLGSFLAQ PQQQQQQPNQ SIGLSMPDSN LGVLAALNAA YSRGGNADAE  360
QVNNAVEHQE KQQQQTQQSD QDDDSRDENS NSDG

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00002.1_g00077.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456993.1	0.0	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	1e-159	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A291I312	0.0	A0A291I312_BRARR; TCP8
TrEMBL	M4EGH2	0.0	M4EGH2_BRARP; Uncharacterized protein
STRING	Bra027886.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-107	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]