PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00002.1_g00081.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 716aa    MW: 75107.9 Da    PI: 10.2294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00002.1_g00081.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.9e-10199228130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                              r++W++eEd+ l+ av+++G g+W++I+++
  Rsa1.0_00002.1_g00081.1 199 RKKWSAEEDQELIAAVNRHGEGSWALISKE 228
                              789************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.882194251IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-11195246IPR009057Homeodomain-like
SuperFamilySSF466899.33E-10195249IPR009057Homeodomain-like
SMARTSM007177.1E-6198249IPR001005SANT/Myb domain
PfamPF002491.6E-8199228IPR001005SANT/Myb domain
CDDcd116606.59E-9200243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MVDSSSSNKK RKEFISEGDI ATLLQRYDTT TILKLLQEMA YYAELKMDWN ELVKKTSTGI  60
TSAREYQLLW RHLAYRDSLL PMDDDSAAPL LQDDDSDMEF ELEASPPVSV DAVSEAVAHV  120
KVIAASYVPI DSDIPEDSIC EAPLTINIPY GLQRRPQEPS DSYWSSRGMN ITFPISLQKA  180
AEGHNGNALA SNMGPRKKRK KWSAEEDQEL IAAVNRHGEG SWALISKEEY EGEITVSQLS  240
QRWGSIRRRL DISNSSTQSY QQRTEAANRA LSLAVGNRVP SKKVAVGIPP VLTSGSITGA  300
QGNGANSGSS LQGQQQAKPV VQAIPRAETS VQTAKARVAA RKPTSTLRAE LMVTANSVAT  360
AACMSGLGTA ASVPKVEPGK NAAPALVPKV KSSQASLPRP SGISSVMNAE PVKTASAASL  420
PRPSGMSSTL NAEPVKSAAA ASFPRPLGTT SASKAEPVKT TSTAVLPRPS GVISAPKADL  480
VKTGHAVSLP RPSGIISSPK TAPVKTASAA SSPRPASMLS APVRSVSPAA TAANTKTQVA  540
GSSSSFNKLS HMAPFSKGPT VQNISVPASF ASSRLAPTQR ANTATVMPQN PSVGVAVTSS  600
SKPVGVQKEQ TQASRTSPLV TTTLQPNKTI STNSVISTGK PVATQVDTPP SLMSKKDQVL  660
QTCTEKSSLA KPPEKQSSST VSPSVVAEPE TKPKDEASKG KSPDVATVPG TEHKGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196200KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00002.1_g00081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457352.10.0PREDICTED: mucin-17
TrEMBLA0A078HN060.0A0A078HN06_BRANA; BnaA09g14920D protein
TrEMBLA0A397XZV80.0A0A397XZV8_BRACM; Uncharacterized protein
STRINGBra027882.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein