PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00002.1_g00106.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 365aa    MW: 41179.7 Da    PI: 9.3774
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00002.1_g00106.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-11267311549
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                              ++ +r ++NRe+A+rsR+RKk   e L+e+v++L+ +N++L ++l
  Rsa1.0_00002.1_g00106.1 267 RKRKRTISNRESAKRSRLRKKRLFEDLTEEVDQLKLKNQELVNQL 311
                              567999*********************************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF134563.2E-2283202No hitNo description
CDDcd062224.09E-1183201No hitNo description
Gene3DG3DSA:3.30.420.101.2E-583206IPR012337Ribonuclease H-like domain
SuperFamilySSF530988.95E-883206IPR012337Ribonuclease H-like domain
PROSITE profilePS508798.695101205IPR002156Ribonuclease H domain
SMARTSM003387.7E-11263334IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.208265314IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-8265313No hitNo description
PfamPF001701.8E-9267312IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-10267313No hitNo description
CDDcd147024.52E-13268315No hitNo description
PROSITE patternPS000360270285IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MFSTSLEPRL RQEQXWSIWL SRNALIFEAL TSPPEEIATR AIRLGREWTY AQGIKATPTN  60
VIQRGTNSKS HPVETEGETL CRSDAAWNKQ TKQAGFGWIF TGHGFTTAVE GSNSQDYVDS  120
PLVAEAMAMR LALIKAATLE IKTLRMSSDN RTLIRAIHGD MQAKEIRGIV HDILEISSVF  180
VSISFSFVSR DFNKEADASA KLSLRRRSVS TLNGSYVHKK KKEPVHICFD DATITGDEIT  240
EILAFLQSDT SDNPSGSNEL LAPVDERKRK RTISNRESAK RSRLRKKRLF EDLTEEVDQL  300
KLKNQELVNQ LANVLSCGNA ISQENNRLKT ESVCLEIRLL ELYRFLVAMQ SPISTRLNYI  360
AKLLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268287RKRTISNRESAKRSRLRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00002.1_g00106.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443324.11e-133PREDICTED: uncharacterized protein LOC108815173
RefseqXP_018487395.11e-143PREDICTED: uncharacterized protein LOC108857881
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122322432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59530.19e-65basic leucine-zipper 4