PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00003.1_g00028.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 215aa    MW: 24175.8 Da    PI: 9.6571
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00003.1_g00028.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30154211259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               Dgy+Wr YG+K vk s++prsYYrCt+++C+vkk+ve++ edp+++++tYeg+Hnh+
  Rsa1.0_00003.1_g00028.1 154 VDGYRWRIYGRKAVKTSPYPRSYYRCTTQRCNVKKRVEKAVEDPTIFITTYEGRHNHP 211
                              5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30138211IPR003657WRKY domain
SuperFamilySSF1182901.57E-25146212IPR003657WRKY domain
PROSITE profilePS5081127.944148213IPR003657WRKY domain
SMARTSM007743.5E-31153212IPR003657WRKY domain
PfamPF031061.3E-23155211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSNETKDFYN YQFASSFSLC EIMNLPTSAS SSYGNNVFDP SSYSSTDCLQ ISPGAYQSLL  60
QKIFGISPTS SEVFNSSIGE TPTRVSAPSS YSEANHPGED SSTSRRKRKL AEDGGEENQS  120
SKKVFRGKAK KNEEKKQREP RVSVMVKSQA GHIVDGYRWR IYGRKAVKTS PYPRSYYRCT  180
TQRCNVKKRV EKAVEDPTIF ITTYEGRHNH PSDSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-23143210774Probable WRKY transcription factor 4
2lex_A4e-23143210774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00003.1_g00028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123991e-108EU912399.1 Brassica napus WRKY28-1 transcription factor (WRKY28-1) mRNA, complete cds.
GenBankKC2465741e-108KC246574.1 Brassica napus WRKY transcription factor 28.1 (WRKY28.1) mRNA, complete cds.
GenBankKF4300451e-108KF430045.1 Brassica rapa WRKY transcription factor 28 (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480586.11e-159PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ27e-96WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0D3DET21e-116A0A0D3DET2_BRAOL; WRKY transcription factor
TrEMBLA0A3P6ER931e-116A0A3P6ER93_BRAOL; WRKY transcription factor
STRINGBo7g105800.11e-117(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.13e-98WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]