PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00006.1_g00067.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 1572aa    MW: 176796 Da    PI: 5.125
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00006.1_g00067.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.9e-192984257
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                             +kR+  t+ ql++Le+++ ++ yps+++r+eL+ kl+L++rq ++WF+ rR k+kk
  Rsa1.0_00006.1_g00067.1 29 KKRQMKTPFQLQTLEKVYSEETYPSEATRAELSVKLDLSDRQLQMWFCHRRLKDKK 84
                             89****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-171084IPR009057Homeodomain-like
PROSITE profilePS5007116.2122585IPR001356Homeobox domain
SuperFamilySSF466894.71E-162684IPR009057Homeodomain-like
SMARTSM003892.7E-172789IPR001356Homeobox domain
CDDcd000863.29E-142984No hitNo description
PfamPF000462.6E-162984IPR001356Homeobox domain
PROSITE profilePS5082717.241472531IPR018501DDT domain
SMARTSM005712.4E-23472531IPR018501DDT domain
PfamPF027911.5E-17473528IPR018501DDT domain
PfamPF050662.8E-13654721IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.3E-6856898IPR028942WHIM1 domain
PfamPF156132.4E-139941066IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1572 aa     Download sequence    Send to blast
MEMGSDEEDQ IKNGSENKKK KIDTLNNNKK RQMKTPFQLQ TLEKVYSEET YPSEATRAEL  60
SVKLDLSDRQ LQMWFCHRRL KDKKDGQAKK PAAPPPPAAA ALSSLNELPA AGDRSGLGSG  120
SGSGCSPYSE PRRNFAGGSS SSRDEVDEYE QPRLSAMVRR AVACIEGQLG EPLREDGPVL  180
GMEFDPLPPG AFGTPIGMEE HQGHPYESKM YEPHDVRPRR PVARSFHAQQ SLDDPSSYTP  240
EMYGRYSESQ ARGNGRSYGI HGNASLNCST SQQDMPSPIV PSAHGDSFLM ERKINDGRVG  300
RGSGQKDPEK VEVQRKKYEE RMRKEMERHE RERRKEEERL MRERIKEEEK LQREHRREVE  360
RREKFLQREN ERAEKQKQKD EIRRERDAIR RKIAIEKATA RRIARESMDL IEDEQLELMD  420
LAATSKGLPS VLQLDHDTLQ NLELYRDSLS TFPPKALQLK MPFTISPWKD SEENVGNLLM  480
VWRFLISFSD VLDLWPFTLD EFIQAFHDYD SRLLGEIHIT LLRSIIRDIE HVARTPYSGI  540
GNNQYTTANP EGGHPHIVEG AYAWGFDISS WKKHLNPLTW PEILRQLALS SGFGPKLKKK  600
SSHVTQTAHK DETKGCEDII STIRSGSAAE TAFASMLEKG LMAPRKSRHR LTPGTVKFAA  660
LHVLSLEGSK GLTLLELADK IQKSGLRDLS TSKTPEASIS VALTRDAKLF ERIAPCTYCV  720
RAPYVKDPAD GEAILAEARK KIRAFENGLT GPEDLNDLER DEDFECDVDE EPEVDDLVTL  780
ASASNGNDLG VANGLSGKGG DDMSCDVKAD VNNEAEKEFS PPPSSIKSIV PQYHSKDSAV  840
SCVDDTNAVV EDSNQGQSWI QGLTEGDYCH LSVEERLEAL VALVSIVNEG NSLRASLEDR  900
MEAANSLKKQ MWAEAQLDNS CMRDVLKLGF QNLSSNKTES TMEVVSNDLH KSPAERASIN  960
QEANTSQENC SLKRSRSQLK SYIGDKAEEV YPYRSLPLGQ DRRHNRYWHF AASASRSDPC  1020
SGLIFVELHD GKWRLIDSEE AFDTLVASLD MRGIRESHLR IMLQKIEGSF KENACKEKSV  1080
VNHSPVDSVS PSSAISGSNS DSMETSTSIR VELGRNDREK GSLSKRFHDF QRWMWTETYS  1140
SLPSCARKHG KKRRELLATC EVCVASYPSE YTHCTSCRRK LNMVDDSSER KILGSGLTAS  1200
PLPFGVRLLK ALLVFLEASV PDEALESFWT EDKRKNWGFR LNASSSPEEL LQVLTSLESA  1260
IKKEYLSSNF ASAKELLGAT DDSGSVEVVP WIPKTVSAVA LRLLDLDASV MYVKPEKPEL  1320
IPEDDKEEQI SLFPGKSLIK GKGHREQEDQ DEVVPNSGKK SKKRRVRFGS VSNRKVKRTK  1380
LQGGPNRFVA GRSNVEVDRN LGSVELNHHQ VPGRGKRTVR KRPERNDEDS YRLASRMADI  1440
VRPNSEEVEE EEEEQTFRDI NEDWASETPK RVMTPMQVDD ESDNSVGVES EDDDDEGQFV  1500
VYDQRNKWGL DWNSNPNEAM EDDEEGVGVE RVEREDVAEM SESSEDDDDA PANNVATNNY  1560
DSESEDYSSS DS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784RRLKDKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00006.1_g00067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450870.10.0PREDICTED: homeobox-DDT domain protein RLT1-like
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A397YEK50.0A0A397YEK5_BRACM; Uncharacterized protein
STRINGBra010869.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1