PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00015.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 90aa    MW: 10247.5 Da    PI: 8.9284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00015.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07952344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             +WT    +++ +a + + ++   +W  +a+ +g  ++++++k ++
  Rsa1.0_00015.1_g00020.1  9 SWTSKQNKIFERALAVYDKDtpdRWQNVAKAVG-SKSAEEVKRHY 52
                             7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.673560IPR017884SANT domain
SMARTSM007176.9E-6658IPR001005SANT/Myb domain
PfamPF002491.4E-5952IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-12963IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-5962IPR009057Homeodomain-like
CDDcd001671.45E-41652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSMSSSW TSKQNKIFER ALAVYDKDTP DRWQNVAKAV GSKSAEEVKR HYDILVEDIK  60
NIEQDLVPLP KYKTIDVGSK SRGINDFDLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-30181182RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00015.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893561e-120AC189356.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436473.19e-61PREDICTED: protein RADIALIS-like 5
SwissprotQ8GW754e-50RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A087HPN21e-52A0A087HPN2_ARAAL; Uncharacterized protein
TrEMBLM4D6S34e-52M4D6S3_BRARP; Uncharacterized protein
STRINGBra012183.1-P6e-53(Brassica rapa)
STRINGA0A087HPN22e-53(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.15e-52RAD-like 5