PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00015.1_g00081.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 153aa MW: 17573.2 Da PI: 9.6204

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00015.1_g00081.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.1	6.1e-10	9	32	1	24
S---SHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKA 24 kr +++ nrqvt+skR+ gilKKA Rsa1.0_00015.1_g00081.1 9 KRLDSSGNRQVTYSKRKCGILKKA 32 688999*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.9	1	32	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.5E-11	1	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-13	2	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-5	13	32	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MGRVKLKIKR LDSSGNRQVT YSKRKCGILK KAIFSPTGKP TMLHGEQSCI EEVISKFAQL 60 TPQERTKRKL ESLEALKKTF KKLDHDVNIH DFFRSKELPV YPNCFFESVK QEDQKYSNPA 120 QHFEQLGQEG DGCLGLQRIG EEYSYPTPFG TTL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00015.1_g00081.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB094116	7e-64	AB094116.1 Arabidopsis thaliana At1g18750 mRNA for MADS-box protein, partial cds.
GenBank	AY143172	7e-64	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013682304.1	3e-48	agamous-like MADS-box protein AGL65
Refseq	XP_013682306.1	3e-48	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	3e-46	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A3P6FBP9	3e-47	A0A3P6FBP9_BRAOL; Uncharacterized protein
STRING	Bra031049.1-P	9e-48	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-48	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]