PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00017.1_g00036.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 473aa    MW: 53606.1 Da    PI: 7.0702
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00017.1_g00036.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.3e-201497194
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                             ffk l   ++++s+ + +p kf++eh +g k+e+kt++l++    ++W+vk+  ++++    lt+GWkeFvka++L++gDf+vF+++g
  Rsa1.0_00017.1_g00036.1 14 FFKPL--LSSSQSH-FNIPVKFFSEHiEG-KHEGKTVSLRSdALAKTWKVKM--EGQG----LTEGWKEFVKAHDLRVGDFLVFRHEG 91
                             67777..5555555.99*********644.56789*****96677*******..8887....***********************999 PP

                             SSEE..EE CS
                       B3 87 rsefelvv 94
                             ++ f  +v
  Rsa1.0_00017.1_g00036.1 92 DMLF--NV 97
                             8877..44 PP
2B361.31.6e-19145236599
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               ++  +++++ ++lp  fa+++g+ +  s++++l++e grsW  +l  +  sgr+v+ +GW +F+ an+ ++gD+ +Fkl + + +
  Rsa1.0_00017.1_g00036.1 145 YVTVFSMTRDTVSLPTAFAKRNGLYEV-SQKIVLMNEGGRSWPSEL-KKLESGRIVIVRGWTSFCVANKFQVGDSWTFKLLR-NAE 227
                              55666788999***********99865.56****************.4667788*************************998.677 PP

                              ..EEEEE-S CS
                       B3  91 elvvkvfrk 99 
                              ++v++++++
  Rsa1.0_00017.1_g00036.1 228 TPVFQLCSR 236
                              79***9987 PP
3B342.11.6e-13268359799
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              + ++l++g   lp +f++ ++++k+e  +++l d++g +W + l+++++sg+  ++  +GWk+F+  n++ + ++++++l+    +
  Rsa1.0_00017.1_g00036.1 268 TLNSLERGKQHLPLSFTSVNDLIKPE--KVILVDKNGDEWVMDLKVDNRSGQmcIMSVNGWKSFCAVNEVGAEESLTLELIL-GAA 350
                              56778889999*********999666..8*****************888877777788*********************996.677 PP

                              ..EEEEE-S CS
                       B3  91 elvvkvfrk 99 
                              ++v+k+++k
  Rsa1.0_00017.1_g00036.1 351 SPVLKFCSK 359
                              789999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-257105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-249109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.53511103IPR003340B3 DNA binding domain
CDDcd100171.91E-191298No hitNo description
PfamPF023622.1E-141495IPR003340B3 DNA binding domain
SMARTSM010197.0E-2414103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-18139235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.424141237IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-18141235IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-18143236IPR003340B3 DNA binding domain
SMARTSM010197.2E-20145237IPR003340B3 DNA binding domain
CDDcd100171.64E-16151235No hitNo description
PROSITE profilePS5086310.87262360IPR003340B3 DNA binding domain
CDDcd100172.17E-10262358No hitNo description
SMARTSM010196.8E-16262360IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-12264362IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-12265359IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-12265359IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MENASLFSPA NPHFFKPLLS SSQSHFNIPV KFFSEHIEGK HEGKTVSLRS DALAKTWKVK  60
MEGQGLTEGW KEFVKAHDLR VGDFLVFRHE GDMLFNVTAL GPSCCEIQYA LFGSRHKDKE  120
EEEDETERSD KETEDNDLPT CFSQYVTVFS MTRDTVSLPT AFAKRNGLYE VSQKIVLMNE  180
GGRSWPSELK KLESGRIVIV RGWTSFCVAN KFQVGDSWTF KLLRNAETPV FQLCSRAKTE  240
RKKKETLSKE ANIAERTDGN RFVNLTPTLN SLERGKQHLP LSFTSVNDLI KPEKVILVDK  300
NGDEWVMDLK VDNRSGQMCI MSVNGWKSFC AVNEVGAEES LTLELILGAA SPVLKFCSKM  360
EQSPLEPAEA RAHKRARVQT CIQEIRPKLE IREETAEEGE PSHRTRASDK TITNRGNLRE  420
TLPSSIPNQL MNKVKHSVLC TLTSIRLFRE ELKTMEQKLE DSLKDIDNLG NVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00017.1_g00036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467816.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D11e-171REM8_ARATH; B3 domain-containing protein REM8
TrEMBLV4MMK30.0V4MMK3_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006412570.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-170B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]