PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00017.1_g00127.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 231aa    MW: 25472 Da    PI: 4.3385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00017.1_g00127.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.4e-181969155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  Rsa1.0_00017.1_g00127.1 19 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFQTAEMAMRAHDVAALSIKG 69
                             68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-111969IPR001471AP2/ERF domain
SMARTSM003805.9E-352083IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-212077IPR016177DNA-binding domain
PROSITE profilePS5103222.4712077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-312078IPR001471AP2/ERF domain
PRINTSPR003673.9E-102132IPR001471AP2/ERF domain
CDDcd000185.46E-322179No hitNo description
PRINTSPR003673.9E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVDSSLGSDK EKKGGSKQPV YRGVRMRSWG KWVSEIREPR KKSRIWLGTF QTAEMAMRAH  60
DVAALSIKGS SAILNFPELS DSLPRPVSLS PRDVRAAATK AALMDFGTKQ VSHAMSESES  120
NETAAFDKRS ESESNETATS DKGSESESNE TASSCVTSID EESTASDDLE KIVELPSLGT  180
SLDESNEFVF YDTLDDLVFM PSWLRGGPED YFTYNSNDSP LNSVFDESFS W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-191578973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00467DAPTransfer from AT4G32800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00017.1_g00127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615822e-86AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78.
GenBankAY0889182e-86AY088918.1 Arabidopsis thaliana clone 99612 mRNA, complete sequence.
GenBankBT0029242e-86BT002924.1 Arabidopsis thaliana clone RAFL14-88-G18 (R20108) putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankBT0043432e-86BT004343.1 Arabidopsis thaliana clone U20108 putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankCP0026872e-86CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450778.11e-166PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0803e-94ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0D3A2H41e-144A0A0D3A2H4_BRAOL; Uncharacterized protein
STRINGBo1g009990.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-96ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]