PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00017.1_g00137.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 320aa    MW: 35524.4 Da    PI: 4.5959
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00017.1_g00137.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.7e-18209243135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Rsa1.0_00017.1_g00137.1 209 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 243
                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-991299IPR016679Transcription factor, GATA, plant
SMARTSM004012.1E-17203253IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438203239IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-15206267No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14207241IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.99E-15208255No hitNo description
PfamPF003201.1E-15209243IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEQQKLTPEL FLVAGNSDSF VVDDLLDFSN DNGQPDDELE TFPDSSTVSP GNLADISNSS  60
SSLYTDGSVF SDDLCVPSED LAELEWLSNF VEESFSKEDQ DKLQLLSGLQ KPQTTRLTLT  120
KPEPEPEPEL DQIFIPTDTD DSNVSAVPAK ARSKRPRSAA STWASRLLAI AGSSDESYPK  180
KKQLRAKEHD GTAGELEGEA GETGGERRCL HCATDKTPQW RTGPMGPKTL CNACGVRYKS  240
GRLVPEYRPA SSPTFVMARH SNSHRKVMEL RRQKEMRDEG LMSQLRCESL VMDIRSNGDD  300
FLIRDNNSIN HVAPDFRHLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00017.1_g00137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467976.10.0PREDICTED: GATA transcription factor 9
SwissprotO826321e-164GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A398ALJ80.0A0A398ALJ8_BRACM; GATA transcription factor
TrEMBLM4D4I90.0M4D4I9_BRARP; GATA transcription factor
STRINGBra011393.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-144GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]