PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00019.1_g00015.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 265aa MW: 29740.6 Da PI: 10.0552

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00019.1_g00015.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	54.5	5.2e-17	11	101	15	107
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvq 100 +++++l +++++ms++aerda+++er+ al++k++a+a+rd+a qrdkal+ r++a++erd++l al+++e++l+ l+ + Rsa1.0_00019.1_g00015.1 11 DQHNALV--MNQKIMSILAERDAALKERDDALAAKQEALAARDEAIDQRDKALSLRDNAILERDSALSALQFREHNLNYILSRAKL 94 3456666..99*****************************************************************9966655555 PP GAGA_bind 101 vlsgtks 107 s+t++ Rsa1.0_00019.1_g00015.1 95 GASQTSH 101 5555544 PP
2	GAGA_bind	255.7	2.8e-78	119	264	153	300
GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238 ++r+++ k+ k++k k+ +e+ +++ ++++ ++ +++++s d++ln v++De+t+PvP+C+CtG+ r CYkWGnGGWqS+CCttt Rsa1.0_00019.1_g00015.1 119 SRRKRNRKQDKRSKGKRVGEDLNHQLASPG--KKCRKDWDSNDVGLNLVTFDETTMPVPMCTCTGTARHCYKWGNGGWQSSCCTTT 202 355566777788888888999999999999..57************************************************** PP GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 +S+yPLP+++++r++R++grKmS+++f++lL++La+eG+dls pvDLkd+WA+HGtn+++ti Rsa1.0_00019.1_g00015.1 203 LSQYPLPQMPNKRHSRVGGRKMSGNVFSRLLSRLAGEGHDLSSPVDLKDYWARHGTNRYITI 264 ***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.6E-120	1	265	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.2E-89	11	264	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MPNHHHQAKE DQHNALVMNQ KIMSILAERD AALKERDDAL AAKQEALAAR DEAIDQRDKA 60 LSLRDNAILE RDSALSALQF REHNLNYILS RAKLGASQTS HLPNPSPLST IPHEAAAPSR 120 RKRNRKQDKR SKGKRVGEDL NHQLASPGKK CRKDWDSNDV GLNLVTFDET TMPVPMCTCT 180 GTARHCYKWG NGGWQSSCCT TTLSQYPLPQ MPNKRHSRVG GRKMSGNVFS RLLSRLAGEG 240 HDLSSPVDLK DYWARHGTNR YITIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	126	RRKRNRKQ
2	119	129	RRKRNRKQDKR
3	128	134	KRSKGKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00019.1_g00015.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189521	0.0	AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470464.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like
Refseq	XP_018470465.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like
Refseq	XP_018470466.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like
Refseq	XP_018470467.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like
Refseq	XP_018470468.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like
Swissprot	F4JUI3	1e-147	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	M4D5X9	1e-179	M4D5X9_BRARP; Uncharacterized protein
STRING	Bra011886.1-P	1e-180	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.1	1e-138	basic pentacysteine 5