PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00019.1_g00029.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 82aa    MW: 9049.88 Da    PI: 6.799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00019.1_g00029.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091257245
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             g+WT+   + + +a + +  +   +W+ Ia+ +g g+t +++k ++ 
  Rsa1.0_00019.1_g00029.1 12 GSWTAKQNKAFEQALATYDQDtpnRWHNIAQVVG-GKTTEEVKRHYE 57
                             89*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.249964IPR017884SANT domain
SMARTSM007175.7E-91062IPR001005SANT/Myb domain
PfamPF002491.3E-71257IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-131268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-61366IPR009057Homeodomain-like
CDDcd001674.19E-81460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASSSVSSHS SGSWTAKQNK AFEQALATYD QDTPNRWHNI AQVVGGKTTE EVKRHYELLV  60
QDINSIENGL VPFPNYNANG RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-31780377RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00019.1_g00029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895211e-106AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
GenBankAC1896351e-106AC189635.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004J05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107919.15e-46PREDICTED: protein RADIALIS-like 1
RefseqXP_013640791.15e-46protein RADIALIS-like 1
RefseqXP_013687135.15e-46protein RADIALIS-like 1
SwissprotF4JVB81e-41RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLM4D5W39e-45M4D5W3_BRARP; Uncharacterized protein
STRINGBra011870.1-P2e-45(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-42RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]