PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00022.1_g00025.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 185aa    MW: 21353.7 Da    PI: 4.6913
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00022.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.51.9e-3431181128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdLp k+ +e ++wyf+s++         ++r t++gyW + 
  Rsa1.0_00022.1_g00025.1   3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPHDPWDLPGKALQEGRQWYFYSRKT--------QERLTSNGYWGSM 79 
                              79*************************999.99***************77778899*****9975........47999******** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+d++++++ ++++vg+kk L+fy g++    +t+Wvm+ey+l
  Rsa1.0_00022.1_g00025.1  80 GTDEPIFTSsTHKKVGIKKYLTFYLGDS----QTNWVMQEYSL 118
                              ******99867888**********7654....68*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-431153IPR003441NAC domain
PROSITE profilePS5100541.7243153IPR003441NAC domain
PfamPF023652.9E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPHDPWDLPG KALQEGRQWY  60
FYSRKTQERL TSNGYWGSMG TDEPIFTSST HKKVGIKKYL TFYLGDSQTN WVMQEYSLPD  120
SSSRSSKRSN RGSTSSTHKP DYSKWVICRV YEQNCSEEED DDGAELSCLD EVFLSLDDLD  180
EVSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-37115918174NAC domain-containing protein 19
3swm_B6e-37115918174NAC domain-containing protein 19
3swm_C6e-37115918174NAC domain-containing protein 19
3swm_D6e-37115918174NAC domain-containing protein 19
3swp_A6e-37115918174NAC domain-containing protein 19
3swp_B6e-37115918174NAC domain-containing protein 19
3swp_C6e-37115918174NAC domain-containing protein 19
3swp_D6e-37115918174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00022.1_g00025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667460.0KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433233.11e-135PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK61e-116NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A078H0M41e-121A0A078H0M4_BRANA; BnaA02g34250D protein
TrEMBLA0A078IBS61e-116A0A078IBS6_BRANA; BnaC02g43170D protein
TrEMBLA0A398ANP31e-121A0A398ANP3_BRACM; Uncharacterized protein
TrEMBLA0A3P6AL411e-121A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBLA0A3P6D8I01e-116A0A3P6D8I0_BRAOL; Uncharacterized protein
TrEMBLM4ESY51e-121M4ESY5_BRARP; Uncharacterized protein
STRINGBra031915.1-P1e-122(Brassica rapa)
STRINGBo2g166280.11e-117(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-112xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]