PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00024.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 244aa    MW: 27780.1 Da    PI: 4.3534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00024.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.5e-145699755
                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  Rsa1.0_00024.1_g00014.1 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                             57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.29E-135299No hitNo description
Gene3DG3DSA:4.10.280.103.3E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENIDQEFNN YWEHNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EEAKLEAEIR ELESTPKSSL  120
SFSKDFDRDL LVPVTSKKMK QLDSGSSRSL IEVIEVTSMG DRVMVVNVTC NKRTDTMVKL  180
CEVFESLNLK ILTSNLNSFS GMIFYTLFIE ADEEEQEVVR LKIETGIGAY NETQSPTWSI  240
DSLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1454108963Transcription factor MYC2
5gnj_B3e-1454108963Transcription factor MYC2
5gnj_E3e-1454108963Transcription factor MYC2
5gnj_F3e-1454108963Transcription factor MYC2
5gnj_G3e-1454108963Transcription factor MYC2
5gnj_I3e-1454108963Transcription factor MYC2
5gnj_M3e-1454108963Transcription factor MYC2
5gnj_N3e-1454108963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00024.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464657.11e-180PREDICTED: transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-160BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A078IEW91e-172A0A078IEW9_BRANA; BnaA02g08320D protein
TrEMBLA0A3P6A2S21e-172A0A3P6A2S2_BRACM; Uncharacterized protein
STRINGBra020462.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-148bHLH family protein