PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00025.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 258aa    MW: 26449.5 Da    PI: 10.0972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00025.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-074164225
                             -S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                             k ++C  f+ t  C++Gd+C+F H
  Rsa1.0_00025.1_g00015.1 41 KSKPCTKFFSTSGCPFGDNCHFLH 64
                             7789******************** PP
2zf-CCCH33.38.1e-11224249127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +kt+ C +fa+ G C +GdrC+FaHg+
  Rsa1.0_00025.1_g00015.1 224 FKTKMCERFAK-GNCTFGDRCHFAHGE 249
                              69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0683966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0843967IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-64066IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-54164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-84164IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-15109190IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.6E-16119188IPR004088K Homology domain, type 1
SMARTSM003221.8E-11119189IPR004087K Homology domain
PROSITE profilePS5008414.55120184IPR004088K Homology domain, type 1
CDDcd001058.97E-14122184No hitNo description
PfamPF000135.1E-12122186IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.8E-16218253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765223250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8223253IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-7223249IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7224249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDTRKRGRPE AAGSFNSNGG GGGFKKSKQE MESYSTGLGS KSKPCTKFFS TSGCPFGDNC  60
HFLHYVPGGY NAVAQLTNMA PMPQASRNMQ GSGGVGGGGR FSGRGGGESG PGHVSSFGAS  120
ATAKISVDAS LAGAIIGKGG VSSKQICRQT GAKLSIQDHE RDPNLKNIEL EGTFEQINEA  180
SAMVRELIGR LNSAASRRPP GGGGGGLGGG GVGSEGKPHP GSNFKTKMCE RFAKGNCTFG  240
DRCHFAHGEA ELRRSGIA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00025.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407365.11e-148zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-142C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD41e-147E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-147V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_006407365.11e-148(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-113C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]