PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00028.1_g00025.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 496aa    MW: 56556.9 Da    PI: 6.2582
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00028.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.78.4e-21246298155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k r++W ++L ++F++ave L G+e A+Pk+ile m+v gLt+e+v+SHLQk+R+
  Rsa1.0_00028.1_g00025.1 246 KRRVVWDKDLKKKFLDAVEYL-GPE-AVPKKILERMNVVGLTRENVASHLQKHRM 298
                              689******************.887.****************************7 PP
2Response_reg48.35.3e-17731801108
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+ d++  +++ l++ l++ +y ev+++ +g ea++ll ++   +D+ ++  + +  d ++l++ei++e  ++pii+++  ++ +
  Rsa1.0_00028.1_g00025.1  73 VLVFDEDLQNLHSLEKHLQDFRY-EVTTCHEGAEAMRLLGNHLnkFDIAIVEAQNSAADIFRLISEIASEI-DVPIIIISKDDSVQ 156
                              7999*******************.***************776557**********************9988.9************* PP

                              HHHHHHHTTESEEEESS--HHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelv 108
                               +++ +k G+ d+l Kp+ pe+l+
  Rsa1.0_00028.1_g00025.1 157 SVINWIKIGVCDYLIKPIRPEDLR 180
                              **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-2269191IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.6E-2370213No hitNo description
SMARTSM004481.2E-871183IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.39372187IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-1173181IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.08E-1274186No hitNo description
SuperFamilySSF466892.51E-13243302IPR009057Homeodomain-like
PROSITE profilePS512949.602243304IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-20244302IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-20246298IPR006447Myb domain, plants
PfamPF002492.2E-6248297IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEALHDIHAK RVIFEVSSDA VPGTYPLFAH ARLNQKRAAV VEYPASEDSG GPNRIIQNPF  60
DMLTGMFPEG LRVLVFDEDL QNLHSLEKHL QDFRYEVTTC HEGAEAMRLL GNHLNKFDIA  120
IVEAQNSAAD IFRLISEIAS EIDVPIIIIS KDDSVQSVIN WIKIGVCDYL IKPIRPEDLR  180
LIFKHVVKKM RVGRMVESED KAAPEKSSSV GDSTIRNPNK RTRSMFIDGQ VDEKDQDHVR  240
DSTTKKRRVV WDKDLKKKFL DAVEYLGPEA VPKKILERMN VVGLTRENVA SHLQKHRMLL  300
NKQKNQNEKD ENRCLLSQQG GMYSGEGSSK FYRGSNIQFS TQHISNIPQP FIHHHDGVSV  360
AVSTRNLHHH QTSDFTCIKN VEESLIYNEE DAEVSNLASF FTQNEGMSLS HLHEPVMATT  420
MLSNGNQLFP NQQPMMSFHE PSILHTHSFP SSLTPTSFLD QKETSMMTNE SEGLQQWLLI  480
EQEQPNLTDE NRFFEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-14242302162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00028.1_g00025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435635.10.0PREDICTED: LOW QUALITY PROTEIN: putative two-component response regulator-like APRR4
RefseqXP_018435636.10.0PREDICTED: LOW QUALITY PROTEIN: putative two-component response regulator-like APRR4
SwissprotQ9FJ161e-92APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A3P6D6I50.0A0A3P6D6I5_BRAOL; Uncharacterized protein
STRINGBra020652.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.19e-95pseudo-response regulator 4