PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00030.1_g00026.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 229aa MW: 24963.8 Da PI: 12.1824

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00030.1_g00026.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00038	172	205	17	55
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N + L +l+P + +K s iLe+A++YI+ L+ Rsa1.0_00030.1_g00026.1 172 NRKVRVLGRLVPGC-----RKESVPVILEEATDYIQALE 205 55566677777777.....899999***********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.842	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-8	155	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-7	171	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MASLISDTEP PSHPRPSSTD LLRRKKRLSV SSSASVTTGD DGDSHHARWK SEKQQRNYSA 60 KLIQALQQVR LSSSSSSAAT PSPKRGKAVR EAADRALAVS ARGRTLWSRA ILANRIKLKF 120 RKQKRPRPAA AIPAVITTTG SISSSGGGGR RSWKKRRVTV VKLNKKSIPT VNRKVRVLGR 180 LVPGCRKESV PVILEEATDY IQALEMQVRA MKSLAELLSG SNSAPTRPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	27	LRRKKRL
2	123	127	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	bHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269\|PubMed:20023194, ECO:0000269\|PubMed:24009530}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00030.1_g00026.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269\|PubMed:24009530}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434597.1	1e-132	PREDICTED: transcription factor bHLH148-like
Refseq	XP_018434620.1	1e-132	PREDICTED: transcription factor bHLH148-like
Swissprot	Q9C8Z9	4e-80	BH148_ARATH; Transcription factor bHLH148
TrEMBL	A0A0D3AFA5	1e-100	A0A0D3AFA5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G9X9	1e-100	A0A3P6G9X9_BRAOL; Uncharacterized protein
STRING	Bo1g147860.1	1e-101	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6157	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	3e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sukweenadhi J, et al. Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress. Microbiol. Res., 2015. 172: p. 7-15 [PMID:25721473]