PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00032.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 259aa    MW: 29550.9 Da    PI: 6.218
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00032.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.3e-39321311100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am++++++++ara+dP++G++++i++lq +
  Rsa1.0_00032.1_g00004.1  32 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKDLSPPEKDAAMHTIMFQSDARANDPIEGCYSIIRRLQYE 117
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +e  k+el+++ ++
  Rsa1.0_00032.1_g00004.1 118 IEYNKNELDMVLHQ 131
                              ********988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.89731132IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-3632128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MPSNKPSSIF PLHHKQTTPL KPSSSTNTTN QACAACKYQR RKCAPDCLLA PYFPHDRHRQ  60
FLNAHKLFGV SNITKIIKDL SPPEKDAAMH TIMFQSDARA NDPIEGCYSI IRRLQYEIEY  120
NKNELDMVLH QLAVFRDRAH NHYHQEPHMQ MQEPEDLSSS CDLNNNNSIP YSYPLHHVQE  180
PNQQQQYSSS GNFNGLQEDM WCLQLQDSST TVNMKGGFID ECGGVNKPVE DASNEFEHHD  240
GFVDDSKLDL PSTQFIVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-27231262105LOB family transfactor Ramosa2.1
5ly0_B7e-27231262105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00032.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493270.10.0PREDICTED: LOB domain-containing protein 22
SwissprotQ9LRW11e-145LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A3P5ZJ581e-173A0A3P5ZJ58_BRACM; Uncharacterized protein
STRINGBo5g132010.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-136LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]