PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00032.1_g00024.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 1337aa MW: 147863 Da PI: 6.1832

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00032.1_g00024.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	31.9	4.3e-10	1280	1303	35	58
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58 + py heSRh hA +R+R+sgGrF Rsa1.0_00032.1_g00024.1 1280 QPPYFHESRHLHAFKRARSSGGRF 1303 669********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14438	3.5E-24	70	151	IPR025852	Ataxin 2, SM domain
Gene3D	G3DSA:2.30.30.100	3.0E-4	80	116	No hit	No description
Pfam	PF14438	9.6E-20	421	504	IPR025852	Ataxin 2, SM domain
Gene3D	G3DSA:2.30.30.100	1.6E-4	429	466	No hit	No description
Pfam	PF06741	3.1E-20	578	648	IPR009604	LsmAD domain
SMART	SM01272	2.1E-25	578	649	IPR009604	LsmAD domain
Pfam	PF14438	2.5E-25	855	936	IPR025852	Ataxin 2, SM domain
Gene3D	G3DSA:2.30.30.100	5.4E-4	865	903	No hit	No description
SMART	SM00521	1.9E-5	1245	1306	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	13.884	1246	1306	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-7	1280	1303	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1337 aa Download sequence Send to blast
MVFSDCIFPL DSNHGFNGLV RLLYDCILLW IIAGLKRWPF KQFEAAMDTL PDPQSKSSSN 60 VSPHRRETSR DSLVYLTTCM IGHLVEVHLK NGSVYRGIFH AADMEKDFGI VLKMASLIKD 120 SRQRSRSDFF RKPPFMTFIV PADELVQVVA ENLSVSSDGT LNTVQTEKPV DLFTDSSISK 180 SRRVDQDREA GRAVDVFDDS GFNEEDDKFL DTCNDQTFGG SSTSSFQKPA SYSGKGYEDV 240 VGDSQSSQNN TNVDQRCSDD ARHIPSEQRS KDSSISESQL GERRKNKNPE VSHSSRSAEA 300 SVSGHGDIKE SAKFSGSGTS ASKIVAERER QGSEVSGKTK SESSFRQSDS RSSESHPAPS 360 TPSRPRLPTS SSIGSLSSSE KPTLNPDAKF KQFEATMNTL PDPQSKSSSN VSPHRKEKSC 420 DSLVAFTSCM IGHHVEVHLN DGSVYSGIFL AADMEKNFGI VLKNAFLIKE STLREHKSRS 480 EFSRKPPFKT LIILADELVQ VLAKNLSVSS DGMLNAVQSE KPMELLTDSS ISKSRHVNQG 540 RELIPWEPDG NVPPGLDNVF DDTSKRQWNQ FEANELLFGV KSTFDEKQYT TTLPRSTQTR 600 ELEEKAQKIA TESEDEIIRH VHVAEERGLQ LSEKSDIDEE TKYSAVRRVD KFDDGGFNEE 660 DDKLLDTCND KNFGGSSTSS VQKSTSSSGK GYKDVPDVPG QTQPSRNNTN VDQSCSISGD 720 DAQNFPSEQR SKDFPAPSSS ISESQLGERR KNNSPESAGE SVSGHGAWLT FISTDYLVSI 780 NNVQLMVNPV KVAKLNLEKL LLCTRSDIKE DAELGVGETS TSKIFKQFEA AMDTLPAPQS 840 KSSSNGYPRR REKSRDSLVY LTTCMIGHLV EVHLKNGSVY SGIFHAADVE KDFGIVLKMA 900 SLIKDSRQRS RSDFFRKPPF KTFIVPADEL VQVVAEDLSV SSDVTLNTVQ SEKPVELLTD 960 SSSVQKPAFS SGKGYENIRG DGQPSRNNTN VDQSCSISGD DARQIPSEQR SKDFPAPGSS 1020 ISERQLDERR KDTNLEVSHS SRSAEESVSG HGDIKEGAKI VGGGTSASKT VTERERQGSQ 1080 VSGKTKSEIS FGQSDSRSLE SRPAPSTPSR PELPPSSSIG SLSSSEKFTF DPNAKEFEPS 1140 QPPVAVQAQS PTEYTSFYCP AEPVQRMPVQ AQSPMAGGSF YYPAAPVQQM PVQAQSPMAD 1200 GSFYYPAAPF QQMPGGYGIQ PQYFEQPMFY DQYYGQQYGQ TGYPQYAQAQ YSQQQQQPMM 1260 MPPRPQMMMG QPPRPPPPHQ PPYFHESRHL HAFKRARSSG GRFLNTKKLQ ESNSPNSHLF 1320 KNPQRKWLEN ILFGLNW

Sequence ? help Back to Top

Protein Sequence Length: 1337 aa Download sequence Send to blast

MVFSDCIFPL DSNHGFNGLV RLLYDCILLW IIAGLKRWPF KQFEAAMDTL PDPQSKSSSN  60
VSPHRRETSR DSLVYLTTCM IGHLVEVHLK NGSVYRGIFH AADMEKDFGI VLKMASLIKD  120
SRQRSRSDFF RKPPFMTFIV PADELVQVVA ENLSVSSDGT LNTVQTEKPV DLFTDSSISK  180
SRRVDQDREA GRAVDVFDDS GFNEEDDKFL DTCNDQTFGG SSTSSFQKPA SYSGKGYEDV  240
VGDSQSSQNN TNVDQRCSDD ARHIPSEQRS KDSSISESQL GERRKNKNPE VSHSSRSAEA  300
SVSGHGDIKE SAKFSGSGTS ASKIVAERER QGSEVSGKTK SESSFRQSDS RSSESHPAPS  360
TPSRPRLPTS SSIGSLSSSE KPTLNPDAKF KQFEATMNTL PDPQSKSSSN VSPHRKEKSC  420
DSLVAFTSCM IGHHVEVHLN DGSVYSGIFL AADMEKNFGI VLKNAFLIKE STLREHKSRS  480
EFSRKPPFKT LIILADELVQ VLAKNLSVSS DGMLNAVQSE KPMELLTDSS ISKSRHVNQG  540
RELIPWEPDG NVPPGLDNVF DDTSKRQWNQ FEANELLFGV KSTFDEKQYT TTLPRSTQTR  600
ELEEKAQKIA TESEDEIIRH VHVAEERGLQ LSEKSDIDEE TKYSAVRRVD KFDDGGFNEE  660
DDKLLDTCND KNFGGSSTSS VQKSTSSSGK GYKDVPDVPG QTQPSRNNTN VDQSCSISGD  720
DAQNFPSEQR SKDFPAPSSS ISESQLGERR KNNSPESAGE SVSGHGAWLT FISTDYLVSI  780
NNVQLMVNPV KVAKLNLEKL LLCTRSDIKE DAELGVGETS TSKIFKQFEA AMDTLPAPQS  840
KSSSNGYPRR REKSRDSLVY LTTCMIGHLV EVHLKNGSVY SGIFHAADVE KDFGIVLKMA  900
SLIKDSRQRS RSDFFRKPPF KTFIVPADEL VQVVAEDLSV SSDVTLNTVQ SEKPVELLTD  960
SSSVQKPAFS SGKGYENIRG DGQPSRNNTN VDQSCSISGD DARQIPSEQR SKDFPAPGSS  1020
ISERQLDERR KDTNLEVSHS SRSAEESVSG HGDIKEGAKI VGGGTSASKT VTERERQGSQ  1080
VSGKTKSEIS FGQSDSRSLE SRPAPSTPSR PELPPSSSIG SLSSSEKFTF DPNAKEFEPS  1140
QPPVAVQAQS PTEYTSFYCP AEPVQRMPVQ AQSPMAGGSF YYPAAPVQQM PVQAQSPMAD  1200
GSFYYPAAPF QQMPGGYGIQ PQYFEQPMFY DQYYGQQYGQ TGYPQYAQAQ YSQQQQQPMM  1260
MPPRPQMMMG QPPRPPPPHQ PPYFHESRHL HAFKRARSSG GRFLNTKKLQ ESNSPNSHLF  1320
KNPQRKWLEN ILFGLNW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00032.1_g00024.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492507.1	0.0	PREDICTED: uncharacterized protein LOC108862772
Swissprot	Q94AM9	1e-128	CID4_ARATH; Polyadenylate-binding protein-interacting protein 4
TrEMBL	A0A3P5ZV36	0.0	A0A3P5ZV36_BRACM; Uncharacterized protein
STRING	Bo3g065870.1	1e-180	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM37614	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	5e-11	nuclear factor Y, subunit A6