PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00037.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 685aa    MW: 76325.6 Da    PI: 5.0337
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00037.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.88.5e-1001254892374
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++s  +  + l+++++     ++++ a+k fs 
  Rsa1.0_00037.1_g00020.1 125 IEDLIRVVDCVESDELQLAQVILSRLNQRlRSPTGRPLQRAAFYFKEALGSLLTGSNRNQTRLLSSWTE----IVQKIRAVKEFSG 206
                              678*************************99*************************55555554444444....8************ PP

                     GRAS  87 vsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                              +sPi+ fsh+taNqaIl++++++      vH++Dfdi+ G+Q+++L++++a+++ ++  lR+T+v+++e   + e++ ++e+L++f
  Rsa1.0_00037.1_g00020.1 207 ISPIPLFSHFTANQAILDSLSSQqsssPFVHVVDFDIGFGGQYASLMREIAEKSISSGFLRVTAVVAEE--CAVETRLVKENLTQF 290
                              ********************9986666789*************************************66..9************** PP

                     GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nse 251
                              A+e++++f++++++ak++e+l+++++r+  gE ++V ++ +++r l       s + ++++ ++++sPkvv++v+ e  ++  +++
  Rsa1.0_00037.1_g00020.1 291 AAEMKIRFQIEFVLAKTFEMLSFKAIRFVDGERTVVLISPAIFRRL-------SGIGDFVNNLRRVSPKVVIFVDGEgwTEIaGAG 369
                              *********************************************9.......44567*******************766668999 PP

                     GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                              sF ++f+ ale+y+++++sl+a +p+ +  ++ vE+++l+++i  +v ++ ++   r+   ++Wre++  aG+++++ls++a+ qa
  Rsa1.0_00037.1_g00020.1 370 SFRREFVAALEFYTMVLESLDAAAPPGDLVKKIVEAFVLRPKIAAAVETAADR---RNAGEMTWREAFCGAGMRSIQLSQFAVFQA 452
                              ************************************************99998...889999************************ PP

                     GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              ++ll+k +++g++v +++++lvl+W++r+Lv++SaWr
  Rsa1.0_00037.1_g00020.1 453 ECLLEKAQVRGFHVAKRQEELVLCWHGRALVATSAWR 489
                              ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.23398469IPR005202Transcription factor GRAS
PfamPF035143.0E-97125489IPR005202Transcription factor GRAS
PfamPF031345.8E-26531607IPR004345TB2/DP1/HVA22-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MKVQASSPQD NQPSNTTNNT NSTDNTTNQL PSMDEHVMRS MDWDSIMKEL ELDDDSTPNP  60
LKTEFTTTES AIGPLYAVDS NLPGFPDQIQ PSDFDSSDVY PGQNQTTGYG FNSLDAVDNG  120
GFDFIEDLIR VVDCVESDEL QLAQVILSRL NQRLRSPTGR PLQRAAFYFK EALGSLLTGS  180
NRNQTRLLSS WTEIVQKIRA VKEFSGISPI PLFSHFTANQ AILDSLSSQQ SSSPFVHVVD  240
FDIGFGGQYA SLMREIAEKS ISSGFLRVTA VVAEECAVET RLVKENLTQF AAEMKIRFQI  300
EFVLAKTFEM LSFKAIRFVD GERTVVLISP AIFRRLSGIG DFVNNLRRVS PKVVIFVDGE  360
GWTEIAGAGS FRREFVAALE FYTMVLESLD AAAPPGDLVK KIVEAFVLRP KIAAAVETAA  420
DRRNAGEMTW REAFCGAGMR SIQLSQFAVF QAECLLEKAQ VRGFHVAKRQ EELVLCWHGR  480
ALVATSAWRL GYVYCSLHLV PISYFVPHAE MSEVLDLVGN TAGCSIGIGL PVYSTFKAIE  540
NRDQSAQRKW LIYWAAYGSF SLVEVFTDKL ISWFPLYYHA KFAFLVWLQL PTIDGAKQIY  600
NNRLRPFLIR HQVRVDRLVD GIKVVRTHQG GVRLARLIIV KIFGSGNEAA PPSQGQGETP  660
NISPEQEPST ATIQDLEESE SDHED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-2811848813378Protein SCARECROW
5b3h_A7e-2811848812377Protein SCARECROW
5b3h_D7e-2811848812377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00037.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470388.10.0PREDICTED: scarecrow-like protein 15
RefseqXP_018471096.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A3P5Z1490.0A0A3P5Z149_BRACM; Uncharacterized protein
TrEMBLM4D5E30.0M4D5E3_BRARP; Uncharacterized protein
STRINGBra011700.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]