PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00041.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21204.8 Da    PI: 5.7875
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00041.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.1e-151562350
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             +e++  r +tfskR++gi KK +E+   Cd+e+a+++fs+ gk +++ 
  Rsa1.0_00041.1_g00013.1 15 VEDYEDRMTTFSKRKAGISKKLNEIVAQCDVEAALLVFSQAGKPHTFT 62
                             79999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.166565IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-17564IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-20680IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-12727IPR002100Transcription factor, MADS-box
PfamPF003195.4E-171561IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-122742IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-124263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKNTKGKQKI EMREVEDYED RMTTFSKRKA GISKKLNEIV AQCDVEAALL VFSQAGKPHT  60
FTHPSMEVAV GRVKSHLRNE LSGKDDTNTA GSLVEAYKRQ KNEELKKCFV DLAKELEMEE  120
EKEKQLRESK SEKKLEEKWW NDEGSSVEEL KQMHQNFVEL NVSLCGSASQ EKDGDGSSSD  180
LAGRGYP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00041.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435277.11e-121PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLA0A078JXZ92e-77A0A078JXZ9_BRANA; BnaCnng72100D protein
TrEMBLA0A0D3AFP22e-77A0A0D3AFP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G7J22e-77A0A3P6G7J2_BRAOL; Uncharacterized protein
STRINGBo1g152200.13e-78(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-44AGAMOUS-like 57