PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00045.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 387aa    MW: 42354.5 Da    PI: 4.8877
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00045.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.31.3e-3494194298
                   DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 
                              lfqrlw++eDei lL+G++d+ + ++g    ++  d+  fye +k++++++++k+qlveK+rrLKkK+++ ++k+ sg+e++f+++
  Rsa1.0_00045.1_g00026.1  94 LFQRLWTDEDEIELLRGFLDYvACHRGGgsGSHPpDTAPFYELIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKMGSGREVVFKSP 179
                              79*******************54455555466667*************************************************** PP

                   DUF573  84 hdqkifelskkiWgs 98 
                              hdq +f++s+kiW++
  Rsa1.0_00045.1_g00026.1 180 HDQATFDISRKIWNQ 194
                              *************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-3195193IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MATDERDAAE SPEMEEDGSA GVGDIYSDDD QQVIPEPDVA DDDGDPNSPL VSATAKDTVT  60
VALPADSDPK WHRATEIVHP RPPPPPPIDD SRRLFQRLWT DEDEIELLRG FLDYVACHRG  120
GGSGSHPPDT APFYELIKSK LQLEFNKNQL VEKLRRLKKK YRNVMSKMGS GREVVFKSPH  180
DQATFDISRK IWNQSGKIIG FEDIIEEPGG SQQHTNVNVD SDNNVLEKKG TVSRKRSRWR  240
MGKMDEENNK PISLSDGPMA SGATTTNENM AEFSDGRNLG GLIEETVKSC VSPLIKEMMN  300
GTVGMMMAAV GGYPGGGGAH AMGVLSPMLI PNLGFGGGGG VKGGGVGDER WRRQQILELE  360
VYSRRLELVQ EQIRATVHEL KTMPSGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00045.1_g00026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0076276e-45AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBankAK1179986e-45AK117998.1 Arabidopsis thaliana At5g28040 mRNA for unknown protein, complete cds, clone: RAFL19-20-B12.
GenBankBT0053566e-45BT005356.1 Arabidopsis thaliana At5g28040 mRNA, complete cds.
GenBankCP0026886e-45CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456640.10.0PREDICTED: probable transcription factor At5g28040
SwissprotF4K5T41e-167STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A3P6DAB40.0A0A3P6DAB4_BRAOL; Uncharacterized protein
STRINGAT5G28040.11e-165(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-136DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]