PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00048.1_g00027.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 672aa    MW: 75247 Da    PI: 6.4699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00048.1_g00027.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09186233455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+++Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_00048.1_g00027.1 186 SHSIAERARREKISERMKFLQDLVPGC----DKITGKAGMLDEIINYVQSLQ 233
                              8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-16180250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-10180237No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16182248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.555182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-9188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.7208.5E-10364450IPR016040NAD(P)-binding domain
SuperFamilySSF517351.69E-50366642IPR016040NAD(P)-binding domain
CDDcd052593.77E-58368667No hitNo description
PfamPF053681.3E-70369659IPR008030NmrA-like domain
Gene3DG3DSA:3.90.25.101.5E-44515672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MMMMNGEATE AELFLNCADM SVLERQRAHL NHHHYPGFFS NSSTINGGDI DGFLASAGLD  60
LPAVYGYTTV HGDARISVTP GNITTESGNF KKRKFGCVET ETKVCNEKKK MMMMMMNREA  120
AVEEEEEEEK SKVTEQSNKS IMMMKMKNKA KKEQNSCSND SSKVTKDSQR TDYIHVRARR  180
GQATDSHSIA ERARREKISE RMKFLQDLVP GCDKITGKAG MLDEIINYVQ SLQRQVEFLS  240
MKLATVSPRL DFNIDDIFAK EVVSAPMTNL PNTVMPPHMM VNSGYPHEMV DSGYVHFNPM  300
QQVVASSDPL SCFNNGQSAT NVWDSDVQNL YSSLVLSRKS TSFEFKVPVL ISVREPRVNC  360
RGNMEKSRVL VIGATGRLGH YLTRFSIQSG HPTFALIRNS AFPDDPSKSV KLESLSSAGV  420
TLLKGSLEDG ESLEEAVMKV DVVISAIPSK HVLDQKLLIN VIKRSPSIKR FIPAEYGADP  480
DKTQVSDLDH GFYSKKSEIR RLIESSGIQH TYICCGLFMR ILLPSLVQPG LQSPPMDKVT  540
VFGDGNVKAV FVNEVDAAAF TIKTIDDPRT LNKILYLRPP GNVCSMNDLV ELWEGKIEKQ  600
LEKTFVSESQ LLEKIKETPY PDDMEMVFIY SVFVKGHHTY FDIDESRGGV NGSELYPDVR  660
YTTVSEFLDT LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qyc_A8e-913666724308phenylcoumaran benzylic ether reductase PT1
1qyc_B8e-913666724308phenylcoumaran benzylic ether reductase PT1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00048.1_g00027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452964.10.0PREDICTED: transcription factor bHLH63 isoform X1
TrEMBLM4D4Y30.0M4D4Y3_BRARP; Uncharacterized protein
STRINGBra011540.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1150922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-124cryptochrome-interacting basic-helix-loop-helix 1