PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00049.1_g00016.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 858aa MW: 98709.9 Da PI: 6.9142

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00049.1_g00016.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.1	1.3e-27	34	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwe 77 +fY+eYAk+vGF++ +++s++s+++g++++++fvC+++g++++++ + +++ r +r++++t+Cka+l+vkk++dg+w+ Rsa1.0_00049.1_g00016.1 34 EFYKEYAKSVGFNTIIKASRRSRMSGKFIDAKFVCTRYGSKKTDQGEedidnipqgKKRGRINRSSSKTDCKACLHVKKRQDGRWV 119 6***************************************999999**99999999******************** PP FAR1 78 vtkleleHnHela 90 + l++eHnHe + Rsa1.0_00049.1_g00016.1 120 IRALVKEHNHETF 132 ********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-25	34	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-22	219	309	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.977	500	536	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.3E-6	502	534	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-6	511	538	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence Send to blast
MVVIDLEMPS PSGECDDERI NEGLEFESKE EAFEFYKEYA KSVGFNTIIK ASRRSRMSGK 60 FIDAKFVCTR YGSKKTDQGE EDIDNIPQGK KRGRINRSSS KTDCKACLHV KKRQDGRWVI 120 RALVKEHNHE TFPGQASSVR ESCGREKQTG ATAKEMKSRK FQALEDRDVE RLLSFFTDMQ 180 AENPFFFYAI DLSEEEQSLR NVFWVDAKGR LDYTCFCDVV SVDTTFIKNE YKLPLVAFIG 240 VNHHGQFLLL GCGLLLNNES TSGFVWLFRA WLKAMHGCQP RVILTKHDQM LKEAVSEALP 300 ASRHCFYTWD TLGQMPEKLG HVTGQEKGFM DEVNEAIYGS CKWDEFEKKW CEVVDRFRLR 360 DNAWLQSLYE DRERWVPVYM KDVSLAGMCT AQRSECASFV FDKYIQRKTT LRAFLDQYKT 420 MIQERYEEEE KAETETLCKQ PGLKSPSPFG KQMVELYTRE MFKKFQAEVL GGVACHPKNE 480 SDEGQRKTFR VQDYEQKRGF VVVWSPESSE VVCSCRLFEF KGFLCRHAMI VLQMSGELTI 540 PSRYVLKRWT KDARRREAVE CDLMCGDSSK AQRYTDLCLR SLKLSEEASL SEESYNAVLN 600 VLNEALRSCE NTSNVIHGVE ELDSDVAQNH SRHEEHNNNN TSFNENVADT RQERSLHEVW 660 KETALQEQRN RYSILDDYLS AQQMSHEMGQ INMMASSQNI HSLGQSITQQ RLYGTEQLSF 720 RPEVITSKSF LRSPAPAAST EPESGFVFSF LWFVLIFLFI GGLHVDFDGA SWSRISKIKG 780 WGLSSSCMHL ISFADVFEVR SSPRISQSFF LGVCMFASRS SASLAFACRS SVEFDSAIKS 840 RRIRFQVRTK CSVLRIEA

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence Send to blast

MVVIDLEMPS PSGECDDERI NEGLEFESKE EAFEFYKEYA KSVGFNTIIK ASRRSRMSGK  60
FIDAKFVCTR YGSKKTDQGE EDIDNIPQGK KRGRINRSSS KTDCKACLHV KKRQDGRWVI  120
RALVKEHNHE TFPGQASSVR ESCGREKQTG ATAKEMKSRK FQALEDRDVE RLLSFFTDMQ  180
AENPFFFYAI DLSEEEQSLR NVFWVDAKGR LDYTCFCDVV SVDTTFIKNE YKLPLVAFIG  240
VNHHGQFLLL GCGLLLNNES TSGFVWLFRA WLKAMHGCQP RVILTKHDQM LKEAVSEALP  300
ASRHCFYTWD TLGQMPEKLG HVTGQEKGFM DEVNEAIYGS CKWDEFEKKW CEVVDRFRLR  360
DNAWLQSLYE DRERWVPVYM KDVSLAGMCT AQRSECASFV FDKYIQRKTT LRAFLDQYKT  420
MIQERYEEEE KAETETLCKQ PGLKSPSPFG KQMVELYTRE MFKKFQAEVL GGVACHPKNE  480
SDEGQRKTFR VQDYEQKRGF VVVWSPESSE VVCSCRLFEF KGFLCRHAMI VLQMSGELTI  540
PSRYVLKRWT KDARRREAVE CDLMCGDSSK AQRYTDLCLR SLKLSEEASL SEESYNAVLN  600
VLNEALRSCE NTSNVIHGVE ELDSDVAQNH SRHEEHNNNN TSFNENVADT RQERSLHEVW  660
KETALQEQRN RYSILDDYLS AQQMSHEMGQ INMMASSQNI HSLGQSITQQ RLYGTEQLSF  720
RPEVITSKSF LRSPAPAAST EPESGFVFSF LWFVLIFLFI GGLHVDFDGA SWSRISKIKG  780
WGLSSSCMHL ISFADVFEVR SSPRISQSFF LGVCMFASRS SASLAFACRS SVEFDSAIKS  840
RRIRFQVRTK CSVLRIEA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00049.1_g00016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018464344.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 1
Swissprot	Q5UBY2	0.0	FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A1J3I6A3	0.0	A0A1J3I6A3_NOCCA; Protein FAR1-RELATED SEQUENCE 1
STRING	XP_006413913.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.2	0.0	FAR1-related sequence 1