PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00056.1_g00030.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 341aa    MW: 38468.1 Da    PI: 7.1346
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00056.1_g00030.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.64.6e-3063168289
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                               g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  +++l+ +                      
  Rsa1.0_00056.1_g00030.1  63 FGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifaesssts 148
                              689*************************************************************4444444444444443333332 PP

                      TCP  66 ....ssssaseceaesssssasnsssg.............k 89 
                                  +                     +             +
  Rsa1.0_00056.1_g00030.1 149 afpgT---------------------NlgflqswdlggssS 168
                              22220.....................133444444444321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-2865188IPR005333Transcription factor, TCP
PROSITE profilePS5136929.78965123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MRSRECDEEE SHQAKQERDH NHNHQVNLNN MLEQHNQPSS VSSSRQWTSA FRNPRIVRVS  60
KAFGGKDRHS KVCTVRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVID WLLEAAKDDV  120
DKLPPLQFPH GFNQMYPNLI FAESSSTSAF PGTNLGFLQS WDLGGSSSRT RSRITETTTT  180
PRESFDLDKG KWIKQDEDSN HQEHGFDMNH NHFSLTNPYN NNNTSCYYNL GHLQHSLDQS  240
GNNVTVAISN VPNNNNNNLN LPPPAMSSLF PTYPSFLGGS HQHHHVVDGA GNLQLFGSNA  300
NTASQQQMMT GNSSLIRPLH HLMSSNNHDM DRHSSDNDSH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1970124155Putative transcription factor PCF6
5zkt_B3e-1970124155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00056.1_g00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455058.10.0PREDICTED: transcription factor TCP5-like isoform X2
RefseqXP_018455059.10.0PREDICTED: transcription factor TCP5-like isoform X3
SwissprotQ9FME31e-173TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A078J6M40.0A0A078J6M4_BRANA; BnaC07g49840D protein
TrEMBLA0A3N6RHT10.0A0A3N6RHT1_BRACR; Uncharacterized protein
TrEMBLA0A3P6E5P10.0A0A3P6E5P1_BRAOL; Uncharacterized protein
STRINGBo7g098260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-161TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]