PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00056.1_g00041.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 252aa MW: 27658.4 Da PI: 7.5837

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00056.1_g00041.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.4	2.8e-37	40	100	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+ sqPr+fCk+CrryWtkGG lrnvPvGgg+r k+s+ Rsa1.0_00056.1_g00041.1 40 HHQSLKCPRCNSLNTKFCYYNNYNHSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRTAKRSK 100 57899***************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-33	31	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MQDIHDYSMT GSGGGGGGST VRFLGGDRRM RVHQNNILNH HQSLKCPRCN SLNTKFCYYN 60 NYNHSQPRHF CKSCRRYWTK GGVLRNVPVG GGCRTAKRSK SKQPPSSSLS TADKPTTAQD 120 GEEKPSSSET SSLTASTSTA VTAKVTSDMY NLKLYGNGIE WSTLLGQGSS DGMGGFIETT 180 PFEFGGNTVH QQLEDRTALV DPSMGFEPLD WGSGGGDQTL FDLTSTVDNA HWSHQDQHDF 240 YLPQFSDRFS SF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00056.1_g00041.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353138	1e-85	AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454582.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
Swissprot	Q8LDR0	6e-99	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	A0A3P6DZ95	1e-119	A0A3P6DZ95_BRAOL; Uncharacterized protein
STRING	Bo9g014360.1	1e-120	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	7e-92	OBF binding protein 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]