PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00056.1_g00052.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 209aa MW: 22329 Da PI: 10.6728

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00056.1_g00052.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.1	1.5e-38	11	168	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s + ++ + s Rsa1.0_00056.1_g00052.1 11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStASASLRGNSTTLS- 95 79*************************************************************9999988742222222222222. PP TCP 88 g.............................................kaaksaakskksqksaasalnlakesr 115 + + ++++ +++q+++a+ l ++++++ Rsa1.0_00056.1_g00052.1 96 SsldhkpllgsspfilgkrvradedtpsgfwaaparpefgqvwsfaAGGPQEMFLQQQQQQQAAGLFIHQQQQ 168 1355666778888888888888888888888888888888888887444444433444444443444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-34	16	152	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	16	70	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL 60 RQAEPSIIAA TGTGTTPASF STASASLRGN STTLSSSLDH KPLLGSSPFI LGKRVRADED 120 TPSGFWAAPA RPEFGQVWSF AAGGPQEMFL QQQQQQQAAG LFIHQQQQAA MGEASAARVG 180 NYLPGHLNLL ASLSSGAPGS GRREGDDQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00056.1_g00052.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456989.1	1e-133	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-104	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D3E1M3	1e-129	A0A0D3E1M3_BRAOL; Uncharacterized protein
STRING	Bo9g014260.1	1e-130	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-67	TCP family protein